RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 REM1O75628 298 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 TNNC2P02585 160 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 ZDHHC11BP0C7U3 371 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 PSG2P11465 335 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 TDGF1P13385 188 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 MYL12AP19105 171 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 TCN2P20062 427 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 RPS12P25398 132 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 HTR1EP28566 365 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 KIR3DL2P43630 455 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 TDGF1P3P51864 188 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 CDKN2DP55273 166 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 HBG1P69891 147 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 HBG2P69892 147 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 SLC7A9P82251 487 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 CEACAM16Q2WEN9 425 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 Q6P435 159 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 TNFAIP8L2Q6P589 184 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 ARL9Q6T311 187 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 FAM131AQ6UXB0 335 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 RIBC1Q8N443 379 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 CCNYL1Q8N7R7 359 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 C20orf203Q8NBC4 194 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 GPR26Q8NDV2 337 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 TMEM159Q96B96 161 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 DNAJC19Q96DA6 116 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 DGCR14Q96DF8 476 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 CEP19Q96LK0 163 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 BIRC8Q96P09 236 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 QKIQ96PU8 341 aaKnown RBP eCLIP3.6□□□□□ -1.832e-9■■■■■ 45.2
CCDC88A-206ENST00000430086 SFXN3Q9BWM7 321 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 LINC00597Q9H2U6 94 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 TPK1Q9H3S4 243 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 SLCO1B3Q9NPD5 702 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 HEBP1Q9NRV9 189 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 PAQR5Q9NXK6 330 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 FARSAQ9Y285 508 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 PDS5BQ9NTI5 1447 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 DENND4AQ7Z401 1863 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 A0A1B0GUA9 196 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 PGRMC1O00264 195 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 PSPHP1O15172 72 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 HIST1H1EP10412 219 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 CFL1P23528 166 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 TSPOP30536 169 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 PYCR1P32322 319 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 MAGEA12P43365 314 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 GNG10P50151 68 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 ZNF138P52744 262 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 SLC18A1P54219 525 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 KRTAP10-8P60410 259 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 FAM3AP98173 230 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 PRDX1Q06830 199 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 FAM53BQ14153 422 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 GINS1Q14691 196 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 RGNQ15493 299 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 PRSS8Q16651 343 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 GUCA2BQ16661 112 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 ATP6AP1LQ52LC2 224 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 CLEC12AQ5QGZ9 265 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 SPNS3Q6ZMD2 512 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 RFLNAQ6ZTI6 216 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 FAM231DQ6ZW35 169 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 CALHM1Q8IU99 346 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 OR4P4Q8NGL7 312 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 RXFP4Q8TDU9 374 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 CYGBQ8WWM9 190 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 AP3S1Q92572 193 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 SMARCD1Q96GM5 515 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 PRAP1Q96NZ9 151 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 MMP26Q9NRE1 261 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 PRO0628Q9UI54 55 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 NEUROG3Q9Y4Z2 214 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 NFASCO94856 1347 aa3.59□□□□□ -1.83
CCDC88A-206ENST00000430086 LTBP1Q14766 1721 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SMIM26A0A096LP01 95 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 TRAV8-2A0A0B4J237 113 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 RBFOX3A6NFN3 312 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 METTL15A6NJ78 407 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 MANBAO00462 879 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 MOSP00540 346 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SERPINA1P01009 418 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 IL6P05231 212 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 FABP1P07148 127 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 DTYMKP23919 212 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 CTRLP40313 264 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SULT1A1P50225 295 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SULT1A2P50226 295 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 CCL23P55773 120 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 REG3AQ06141 175 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 C16orf72Q14CZ0 275 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 ORMDL2Q53FV1 153 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SMUG1Q53HV7 270 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 KCTD16Q68DU8 428 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 PLET1Q6UQ28 207 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 CLEC19AQ6UXS0 136 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 RIMKLAQ8IXN7 391 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 SUMF2Q8NBJ7 301 aa3.58□□□□□ -1.84
CCDC88A-206ENST00000430086 OR1M1Q8NGA1 313 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms