RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 SPACA5Q96QH8 159 aa7.67□□□□□ -1.18
VPS53-203ENST00000401468 NAA50Q9GZZ1 169 aaKnown RBP7.67□□□□□ -1.18
VPS53-203ENST00000401468 SLITRK2Q9H156 845 aa7.67□□□□□ -1.18
VPS53-203ENST00000401468 RNF167Q9H6Y7 350 aa7.67□□□□□ -1.18
VPS53-203ENST00000401468 CNTD2Q9H8S5 307 aa7.67□□□□□ -1.18
VPS53-203ENST00000401468 UFSP2Q9NUQ7 469 aa7.67□□□□□ -1.18
VPS53-203ENST00000401468 GHRLQ9UBU3 117 aa7.67□□□□□ -1.18
VPS53-203ENST00000401468 FBLN5Q9UBX5 448 aa7.67□□□□□ -1.18
VPS53-203ENST00000401468 CEPT1Q9Y6K0 416 aa7.67□□□□□ -1.18
VPS53-203ENST00000401468 MEGF8Q7Z7M0 2845 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 LOC100506127A0A0U1RQW1 187 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 IFITM5A6NNB3 132 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 CLDN25C9JDP6 229 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 AIPO00170 330 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 PDCD5O14737 125 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 LDLRAD4O15165 306 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 IFNA2P01563 188 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 IL1AP01583 271 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 MUC1P15941 1255 aaPredicted RBP7.66□□□□□ -1.18
VPS53-203ENST00000401468 EGR1P18146 543 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 RAB3BP20337 219 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 MYL9P24844 172 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 SDC2P34741 201 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 GPR6P46095 362 aaPredicted RBP7.66□□□□□ -1.18
VPS53-203ENST00000401468 OR3A4PP47883 348 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 BTG1P62324 171 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 ZNF146Q15072 292 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 ZMYND11Q15326 602 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 ZNF404Q494X3 552 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 TMEM155Q4W5P6 130 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 ATPAF1Q5TC12 328 aaPredicted RBP7.66□□□□□ -1.18
VPS53-203ENST00000401468 LRRC28Q86X40 367 aaPredicted RBP7.66□□□□□ -1.18
VPS53-203ENST00000401468 PNLDC1Q8NA58 520 aaKnown RBP7.66□□□□□ -1.18
VPS53-203ENST00000401468 OR51T1Q8NGJ9 327 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 LRRC29Q8WV35 223 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 CCL17Q92583 94 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 CEP19Q96LK0 163 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 C19orf24Q9BVV8 132 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 DNTTIP1Q9H147 329 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 EXOSC4Q9NPD3 245 aaKnown RBP7.66□□□□□ -1.18
VPS53-203ENST00000401468 KAAG1Q9UBP8 84 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 ZNF222Q9UK12 451 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 WIPI2Q9Y4P8 454 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 V9GY05 133 aa7.66□□□□□ -1.18
VPS53-203ENST00000401468 A6NLC8 198 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 NOTOA8MTQ0 251 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 F5H0A9 414 aaPredicted RBP7.65□□□□□ -1.18
VPS53-203ENST00000401468 F8VVB4 439 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 F8VWA3 439 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 LGALS8O00214 317 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 AKR7A2O43488 359 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 SPRY1O43609 319 aaPredicted RBP7.65□□□□□ -1.18
VPS53-203ENST00000401468 ZNF780AO75290 641 aaPredicted RBP7.65□□□□□ -1.18
VPS53-203ENST00000401468 CYB5R3P00387 301 aaPredicted RBP7.65□□□□□ -1.18
VPS53-203ENST00000401468 TGP01266 2768 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 SFTPBP07988 381 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 UBBP0CG47 229 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 TGFBR1P36897 503 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 SRP14P37108 136 aaKnown RBP7.65□□□□□ -1.18
VPS53-203ENST00000401468 MDH2P40926 338 aaKnown RBP7.65□□□□□ -1.18
VPS53-203ENST00000401468 RANBP1P43487 201 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 NPBWR2P48146 333 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 BMXP51813 675 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 CAPZA1P52907 286 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 SCAND1P57086 179 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 OR10A3P58181 314 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 NCS1P62166 190 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 HOXA4Q00056 320 aaPredicted RBP7.65□□□□□ -1.18
VPS53-203ENST00000401468 STUMQ69YW2 141 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 ACP7Q6ZNF0 438 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 OR51F2Q8NH61 342 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 ANGPTL6Q8NI99 470 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 TNFAIP8L1Q8WVP5 186 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 SLAMF9Q96A28 289 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 RFT1Q96AA3 541 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 SLC25A46Q96AG3 418 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 MRPS24Q96EL2 167 aaKnown RBP7.65□□□□□ -1.18
VPS53-203ENST00000401468 WDR13Q9H1Z4 485 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 IFT22Q9H7X7 185 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 TMEM165Q9HC07 324 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 SMURF1Q9HCE7 757 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 HMG20AQ9NP66 347 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 STEAP1Q9UHE8 339 aa7.65□□□□□ -1.18
VPS53-203ENST00000401468 AK6Q9Y3D8 172 aaKnown RBP7.65□□□□□ -1.18
VPS53-203ENST00000401468 ANK2Q01484 3957 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 IGKV1D-17A0A075B6S4 117 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 PPIAL4EA0A075B759 164 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 LOC105371242A0A075B767 164 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 SMIM31A0A1B0GVY4 71 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 hCG_1807616A0A1W2PRN6 198 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 OOEPA6NGQ2 149 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 TMEM14DPA8MWL7 114 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 PPIAL4DF5H284 164 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 H3BMQ9 156 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 TRAPPC2LH3BP13 241 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 NDUFA2O43678 99 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 ANGPTL7O43827 346 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 CDRT1O95170 752 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 BPNT1O95861 308 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 KNG1P01042 644 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms