RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SMIM7Q9BQ49 75 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 LIN7CQ9NUP9 197 aaKnown RBP12.95□□□□□ -0.34
TCOF1-201ENST00000323668 CCDC187A0A096LP49 1063 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 A0A1W2PPH5 198 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 TBC1D28Q2M2D7 210 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 OR2T2Q6IF00 324 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 C5orf66Q9H5L9 145 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 TMEM14DPA8MWL7 114 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 GAPDHP04406 335 aaKnown RBP12.95□□□□□ -0.34
TCOF1-201ENST00000323668 NPBWR1P48145 328 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 P2RY4P51582 365 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 PABPC1L2AQ5JQF8 200 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 C6orf15Q6UXA7 325 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-201ENST00000323668 AQP10Q96PS8 301 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 HDHD3Q9BSH5 251 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-201ENST00000323668 LHFPL6Q9Y693 200 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 TRAV20A0A0B4J274 112 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 KLRC4-KLRK1H3BQV0 150 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 SIRPB1O00241 398 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 GPR37O15354 613 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 GABRA2P47869 451 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 ZNF610Q8N9Z0 462 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 RPUSD4Q96CM3 377 aaKnown RBP12.94□□□□□ -0.34
TCOF1-201ENST00000323668 TP53BP1Q12888 1972 aaPredicted RBP12.94□□□□□ -0.34
TCOF1-201ENST00000323668 H3F3AP84243 136 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 HLA-BQ31612 363 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 EIF4E3Q8N5X7 224 aaKnown RBP12.94□□□□□ -0.34
TCOF1-201ENST00000323668 OR10C1Q96KK4 312 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 UCN2Q96RP3 112 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 HEYLQ9NQ87 328 aaPredicted RBP12.94□□□□□ -0.34
TCOF1-201ENST00000323668 RBFOX3A6NFN3 312 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 PNLIPP16233 465 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 HTD2P86397 168 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 ANKRD55Q3KP44 614 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 TMEM41BQ5BJD5 291 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 H2BFWTQ7Z2G1 175 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 OR2I1PQ8NGU4 316 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 GDF15Q99988 308 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 TERTO14746 1132 aaKnown RBP12.94□□□□□ -0.34
TCOF1-201ENST00000323668 MPPED1O15442 326 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 FAM3AP98173 230 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 NUDT16L1Q9BRJ7 211 aaKnown RBP12.94□□□□□ -0.34
TCOF1-201ENST00000323668 CLEC1BQ9P126 229 aa12.94□□□□□ -0.34
TCOF1-201ENST00000323668 TRAV14DV4A0A0A6YYC5 116 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 IGHV3-64DA0A0J9YX35 117 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 A0A0U1RQV5 110 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 hCG_1809904A0A1W2PP81 198 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 A0A1W2PR64 198 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 A0A1W2PRV1 198 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 AP4M1O00189 453 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 SH2D1BO14796 132 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 FOSL2P15408 326 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 TDHQ8IZJ6 230 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 OR10P1Q8NGE3 313 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 VOPP1Q96AW1 172 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 SDK2Q58EX2 2172 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 PPYP01298 95 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 IGHMP01871 453 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 PGA4P0DJD7 388 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 CALCRP30988 508 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 ATRAIDQ6UW56 229 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 RAB40CQ96S21 281 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 TIMP4Q99727 224 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 ERRFI1Q9UJM3 462 aaPredicted RBP12.93□□□□□ -0.34
TCOF1-201ENST00000323668 STARD10Q9Y365 291 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 TIMM8AO60220 97 aaPredicted RBP12.93□□□□□ -0.34
TCOF1-201ENST00000323668 SCGB1D1O95968 90 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 RAB5AP20339 215 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 SRD5A2P31213 254 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 SMRP1Q8NCR6 262 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 OR4A16Q8NH70 328 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 ZNF385AQ96PM9 386 aaKnown RBP12.93□□□□□ -0.34
TCOF1-201ENST00000323668 RSRP1Q9BUV0 290 aa12.93□□□□□ -0.34
TCOF1-201ENST00000323668 CLEC18AA5D8T8 446 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 NPIPB13A6NJU9 1138 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 NPIPB4C9JG80 1138 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 CDS2O95674 445 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 PTGER4P35408 488 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 SULT1A1P50225 295 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 OR2B11Q5JQS5 317 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 LINC00518Q8N0U6 118 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 CLEC18CQ8NCF0 446 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 OR10D3Q8NH80 312 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 SF3B5Q9BWJ5 86 aaKnown RBP12.92□□□□□ -0.34
TCOF1-201ENST00000323668 TGIF2Q9GZN2 237 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 MELTFP08582 738 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 SMIM6P0DI80 62 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 KITLGP21583 273 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 VDAC1P21796 283 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 UNC119Q13432 240 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 OR2A2Q6IF42 318 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 SLC25A47Q6Q0C1 308 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 SAMD10Q9BYL1 202 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 UFSP2Q9NUQ7 469 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 MDFIC2A0A1B0GVS7 189 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 CDRT15L2A8MXV6 281 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 EPHA8P29322 1005 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-201ENST00000323668 PRDX4Q13162 271 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 ZNF808Q8N4W9 903 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-201ENST00000323668 OR8U1Q8NH10 309 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms