RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GABRA1P14867 456 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 CCR2P41597 374 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 DSCR4P56555 118 aaPredicted RBP12.38□□□□□ -0.43
CSPG4-201ENST00000308508 C7orf77A4D0Y5 90 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 MFSD2BA6NFX1 497 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 LINC01387J3KSC0 135 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 KLKB1P03952 638 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 WDR38Q5JTN6 314 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 KISS1RQ969F8 398 aaPredicted RBP12.38□□□□□ -0.43
CSPG4-201ENST00000308508 RAB37Q96AX2 223 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 KTI12Q96EK9 354 aaPredicted RBP12.38□□□□□ -0.43
CSPG4-201ENST00000308508 ZMIZ1Q9ULJ6 1067 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 MED19A0JLT2 244 aaPredicted RBP12.38□□□□□ -0.43
CSPG4-201ENST00000308508 AMMECR1Q9Y4X0 333 aaPredicted RBP12.38□□□□□ -0.43
CSPG4-201ENST00000308508 CRYBA1P05813 215 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 SLC35E3Q7Z769 313 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 RICTORQ6R327 1708 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 TCRBV16S1A1N1A0A5B0 115 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 LINC00862A6NCI5 91 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 FBLL1A6NHQ2 334 aaKnown RBP12.38□□□□□ -0.43
CSPG4-201ENST00000308508 DNASE2O00115 360 aaPredicted RBP12.38□□□□□ -0.43
CSPG4-201ENST00000308508 CLDN18P56856 261 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 SURF2Q15527 256 aaPredicted RBP12.38□□□□□ -0.43
CSPG4-201ENST00000308508 CD226Q15762 336 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 MYOZ1Q9NP98 299 aaPredicted RBP12.38□□□□□ -0.43
CSPG4-201ENST00000308508 GSTZ1O43708 216 aaPredicted RBP12.37□□□□□ -0.43
CSPG4-201ENST00000308508 COL8A1P27658 744 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 BRS3P32247 399 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 KLHDC9Q8NEP7 349 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 ATOH1Q92858 354 aaPredicted RBP12.37□□□□□ -0.43
CSPG4-201ENST00000308508 ZNF98A6NK75 572 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 ZBTB42B2RXF5 422 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 ORM2P19652 201 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 PAFAH1B2P68402 229 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 NSUN5P2Q63ZY6 315 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 AMMECR1LQ6DCA0 310 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 LYG1Q8N1E2 194 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 TMEM208Q9BTX3 173 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 MRPL13Q9BYD1 178 aaKnown RBP12.37□□□□□ -0.43
CSPG4-201ENST00000308508 TMEFF2Q9UIK5 374 aaPredicted RBP12.37□□□□□ -0.43
CSPG4-201ENST00000308508 EPPINO95925 133 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 HIST1H1EP10412 219 aaKnown RBP12.37□□□□□ -0.43
CSPG4-201ENST00000308508 SMUG1Q53HV7 270 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 C12orf54Q6X4T0 127 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 OR2Z1Q8NG97 314 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 ZFPL1O95159 310 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 COX6CP09669 75 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 KHDC3LQ587J8 217 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 MRGPRGQ86SM5 289 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 WDR31Q8NA23 367 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 OR1N2Q8NGR9 330 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 ST6GAL2Q96JF0 529 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 CXCL13O43927 109 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 H3BQ15 152 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 SPATA46Q5T0L3 261 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 ZDHHC16Q969W1 377 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 DOK5Q9P104 306 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 SLX4Q8IY92 1834 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 DOT1LQ8TEK3 1739 aa12.37□□□□□ -0.43
CSPG4-201ENST00000308508 LYZP61626 148 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 RBPMS2Q6ZRY4 209 aaKnown RBP12.36□□□□□ -0.43
CSPG4-201ENST00000308508 C9orf62Q8N4C0 152 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 LRRC3BQ96PB8 259 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 SMDT1Q9H4I9 107 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 DEGS2Q6QHC5 323 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 OR2V1Q8NHB1 315 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 RPEQ96AT9 228 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 PSG11Q9UQ72 335 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 HIST1H1BP16401 226 aaKnown RBP12.36□□□□□ -0.43
CSPG4-201ENST00000308508 SELENOPP49908 381 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 SIGLEC7Q9Y286 467 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 KCNE3Q9Y6H6 103 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 A0A0A6YYD5 115 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 SNURFLB1AK76 121 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 SPTBP11277 2137 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 GNG10P50151 68 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 RBM14Q96PK6 669 aaKnown RBP12.36□□□□□ -0.43
CSPG4-201ENST00000308508 TBX15Q96SF7 602 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 PIPOXQ9P0Z9 390 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 PRRX1P54821 245 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 MPV17LQ2QL34 196 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 FAM109BQ6ICB4 259 aaPredicted RBP12.36□□□□□ -0.43
CSPG4-201ENST00000308508 LINC01553A4QN01 128 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 RER1O15258 196 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 PDCD6O75340 191 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 CXorf1O96002 111 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 TCL1AP56279 114 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 OR1N1Q8NGS0 311 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 OR4S2Q8NH73 311 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 ALKBH3Q96Q83 286 aaPredicted RBP12.36□□□□□ -0.43
CSPG4-201ENST00000308508 ECM29Q5VYK3 1845 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 RAB29O14966 203 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 WNT3P56703 355 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 CEACAM16Q2WEN9 425 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 ERASQ7Z444 233 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 PARP11Q9NR21 331 aa12.36□□□□□ -0.43
CSPG4-201ENST00000308508 K7ESF4 209 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 SMAGPQ0VAQ4 97 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 LNP1A1A4G5 178 aa12.35□□□□□ -0.43
CSPG4-201ENST00000308508 CTSDP07339 412 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms