RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 HSD17B13Q7Z5P4 300 aaPredicted RBP8.82□□□□□ -1
COL6A3-201ENST00000295550 FBXL6Q8N531 539 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 OR52L2PQ8NGH6 319 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 OR1L6Q8NGR2 347 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 C16orf52Q8NHV5 167 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 CLDN23Q96B33 292 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 SEBOXQ9HB31 216 aaPredicted RBP8.82□□□□□ -1
COL6A3-201ENST00000295550 FKBP11Q9NYL4 201 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 H0YIG0 161 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 KRASP01116 189 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 CEACAM5P06731 702 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 PRSS1P07477 247 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 DPPA3Q6W0C5 159 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 MUC20Q8N307 709 aaPredicted RBP8.82□□□□□ -1
COL6A3-201ENST00000295550 TRPM7Q96QT4 1865 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 PLPP2O43688 288 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 ICOSLGO75144 302 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 ANKRD34CP0C6C1 535 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 B4GALT1P15291 398 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 SLC25A1P53007 311 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 NCMAPQ5T1S8 102 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 ARRDC1Q8N5I2 433 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 OR13H1Q8NG92 308 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 ANAPC16Q96DE5 110 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 PELI1Q96FA3 418 aa8.82□□□□□ -1
COL6A3-201ENST00000295550 FRG2CA6NGY1 282 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 M0R3E3 92 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 CRISP2P16562 243 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 LSM11P83369 360 aaKnown RBP eCLIP8.81□□□□□ -1
COL6A3-201ENST00000295550 TMEM178AQ8NBL3 297 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 NAT8Q9UHE5 227 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 SDHBP21912 280 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 ROBO4Q8WZ75 1007 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 WNT1P04628 370 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 PGA3P0DJD8 388 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 SUCLG1P53597 346 aaKnown RBP8.81□□□□□ -1
COL6A3-201ENST00000295550 PPP2CBP62714 309 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 Q56UQ5 140 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 LHX8Q68G74 356 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 LILRB1Q8NHL6 650 aaPredicted RBP8.81□□□□□ -1
COL6A3-201ENST00000295550 NTNG2Q96CW9 530 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 MRGPRX3Q96LB0 322 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 SPOCK3Q9BQ16 436 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 PLXNA3P51805 1871 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 TRGV10A0A0A0MS01 117 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 C11orf94C9JXX5 98 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 ST8SIA1Q92185 356 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 GAL3ST2Q9H3Q3 398 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 H0Y8X5 98 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 PPICP45877 212 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 ZFP36L2P47974 494 aaKnown RBP8.81□□□□□ -1
COL6A3-201ENST00000295550 ERVS71-1P61550 626 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 FAM209BQ5JX69 171 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 FAM109BQ6ICB4 259 aaPredicted RBP8.81□□□□□ -1
COL6A3-201ENST00000295550 TMEM251Q8N6I4 163 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 MARVELD1Q9BSK0 173 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 SLC52A3Q9NQ40 469 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 KCNE3Q9Y6H6 103 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 MFNGO00587 321 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 FABP2P12104 132 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 FAHP16930 419 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 CLN3Q13286 438 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 B3GNTL1Q67FW5 361 aaPredicted RBP8.81□□□□□ -1
COL6A3-201ENST00000295550 RAB37Q96AX2 223 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 TRMT61AQ96FX7 289 aaKnown RBP8.81□□□□□ -1
COL6A3-201ENST00000295550 PRRX2Q99811 253 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 TMED3Q9Y3Q3 217 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 FGF2P09038 288 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 MRM1Q6IN84 353 aaKnown RBP8.81□□□□□ -1
COL6A3-201ENST00000295550 SLC22A13Q9Y226 551 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 SIGLEC7Q9Y286 467 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 FAM157BP0CG42 384 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 PPP1R1AQ13522 171 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 GSG1Q2KHT4 349 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 OSR2Q8N2R0 312 aa8.81□□□□□ -1
COL6A3-201ENST00000295550 ZNF346Q9UL40 294 aaKnown RBP8.81□□□□□ -1
COL6A3-201ENST00000295550 PARM1Q6UWI2 310 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 ARIH2OSQ8N7S6 290 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 ZNF738Q8NE65 137 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 OR5AU1Q8NGC0 362 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 OR10A7Q8NGE5 316 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 VAMP5O95183 116 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 SCAND1P57086 179 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 PNRC1Q12796 327 aaPredicted RBP8.8□□□□□ -1
COL6A3-201ENST00000295550 KCNAB1Q14722 419 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 TNFSF11O14788 317 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 FFAR1O14842 300 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 HRASP01112 189 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 OR1N2Q8NGR9 330 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 ING1Q9UK53 422 aaPredicted RBP8.8□□□□□ -1
COL6A3-201ENST00000295550 DIRC3C9JPN6 131 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 M0R1B8 84 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 SPRY1O43609 319 aaPredicted RBP8.8□□□□□ -1
COL6A3-201ENST00000295550 MPC2O95563 127 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 CD160O95971 181 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 KIR2DS2P43631 304 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 GAMTQ14353 236 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 ZNF343Q6P1L6 599 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 GPR61Q9BZJ8 451 aa8.8□□□□□ -1
COL6A3-201ENST00000295550 HELZP42694 1942 aaKnown RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms