RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 HES1Q14469 280 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 HNF4GQ14541 408 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 ATPAF1Q5TC12 328 aaPredicted RBP11.91□□□□□ -0.5
LDLR-201ENST00000252444 ST8SIA4Q92187 359 aa11.91□□□□□ -0.5
LDLR-201ENST00000252444 GLRXP35754 106 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 EGR4Q05215 589 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 ZNF616Q08AN1 781 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 SKA3Q8IX90 412 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 HSD17B10Q99714 261 aaKnown RBP11.9□□□□□ -0.5
LDLR-201ENST00000252444 FAM206AQ9NX38 181 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 MIOXQ9UGB7 285 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 TSPAN4O14817 238 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 GLDNQ6ZMI3 551 aaPredicted RBP11.9□□□□□ -0.5
LDLR-201ENST00000252444 NUDCD2Q8WVJ2 157 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 SNX22Q96L94 193 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 EIF5A2Q9GZV4 153 aaKnown RBP11.9□□□□□ -0.5
LDLR-201ENST00000252444 MPZL1O95297 269 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 SFT2D2O95562 160 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 OR3A4PP47883 348 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 LHX2P50458 406 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 CLDN18P56856 261 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 ETFDHQ16134 617 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 ACOT7LQ6ZUV0 252 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 OR4S1Q8NGB4 309 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 OR1L6Q8NGR2 347 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 OR14K1Q8NGZ2 314 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 CITED4Q96RK1 184 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 ZNF251Q9BRH9 671 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 IL36GQ9NZH8 169 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 GPR37O15354 613 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 CD3DP04234 171 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 S100A11P31949 105 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 RBM11P57052 281 aaKnown RBP11.9□□□□□ -0.5
LDLR-201ENST00000252444 SORDQ00796 357 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 FAM169BQ8N8A8 192 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 FBXW5Q969U6 566 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 RPEQ96AT9 228 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 RBMXL1Q96E39 390 aaKnown RBP11.9□□□□□ -0.5
LDLR-201ENST00000252444 BIN3Q9NQY0 253 aa11.9□□□□□ -0.5
LDLR-201ENST00000252444 NPIPB7O75200 414 aa11.9□□□□□ -0.51
LDLR-201ENST00000252444 HLA-DOBP13765 273 aa11.9□□□□□ -0.51
LDLR-201ENST00000252444 KIR3DL2P43630 455 aa11.9□□□□□ -0.51
LDLR-201ENST00000252444 ELP2Q6IA86 826 aa11.9□□□□□ -0.51
LDLR-201ENST00000252444 RNF2Q99496 336 aa11.9□□□□□ -0.51
LDLR-201ENST00000252444 PLEKHB1Q9UF11 243 aaPredicted RBP11.9□□□□□ -0.51
LDLR-201ENST00000252444 A0A1W2PN81 502 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 TXNL1O43396 289 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 TDGF1P13385 188 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 CHRNA7P36544 502 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 PIGPP57054 158 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 RPS16P62249 146 aaKnown RBP11.89□□□□□ -0.51
LDLR-201ENST00000252444 C3AR1Q16581 482 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 ARHGAP5-AS1Q96IT6 56 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 SIGLEC12Q96PQ1 595 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 KCNMB2Q9Y691 235 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 CKAP5Q14008 2032 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 PIKFYVEQ9Y2I7 2098 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 M0R036 132 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 PSMB6P28072 239 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 C3orf36Q3SXR2 165 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 AKIRIN2Q53H80 203 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 FAM219BQ5XKK7 198 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 DRAXINQ8NBI3 349 aaPredicted RBP11.89□□□□□ -0.51
LDLR-201ENST00000252444 ZDHHC16Q969W1 377 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 OPN3Q9H1Y3 402 aaPredicted RBP11.89□□□□□ -0.51
LDLR-201ENST00000252444 GFOD1Q9NXC2 390 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 LHFPL6Q9Y693 200 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 MAGEB4O15481 346 aaPredicted RBP11.89□□□□□ -0.51
LDLR-201ENST00000252444 ADAM20O43506 726 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 SYNGR3O43761 229 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 PHLDA2Q53GA4 152 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 IGFL3Q6UXB1 125 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 TCTE3Q8IZS6 198 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 PIMREGQ9BSJ6 248 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 NAA60Q9H7X0 242 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 THYN1Q9P016 225 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 WIPI2Q9Y4P8 454 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 DEFA4P12838 97 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 CCR6P51684 374 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 LTC4SQ16873 150 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 CLEC2AQ6UVW9 174 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 MDS2Q8NDY4 140 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 OR51H1Q8NH63 302 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 ZNF596Q8TC21 504 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 ABHD14BQ96IU4 210 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 THADAQ6YHU6 1953 aa11.89□□□□□ -0.51
LDLR-201ENST00000252444 IGHG3P01860 377 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 LINC01590Q5TEZ4 76 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 GPR157Q5UAW9 335 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 HOGA1Q86XE5 327 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 SUMF1Q8NBK3 374 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 DVL3Q92997 716 aaPredicted RBP11.88□□□□□ -0.51
LDLR-201ENST00000252444 GAR1Q9NY12 217 aaKnown RBP11.88□□□□□ -0.51
LDLR-201ENST00000252444 ANXA10Q9UJ72 324 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 LGALS8O00214 317 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 SHOXO15266 292 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 GNB2P62879 340 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 TBR1Q16650 682 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 OR10P1Q8NGE3 313 aa11.88□□□□□ -0.51
LDLR-201ENST00000252444 BCL2L2Q92843 193 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms