RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 CCL7P80098 99 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 ASCL4Q6XD76 172 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 TCEAL3Q969E4 200 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 REEP6Q96HR9 211 aa17.5■□□□□ 0.39
SYNGAP1-227ENST00000638142 FAM230AA0A1W2PPH8 454 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 SPRY1O43609 319 aaPredicted RBP17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 LIFP15018 202 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 SP6Q3SY56 376 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 RBMS3Q6XE24 437 aaKnown RBP17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 LIAT1Q6ZQX7 453 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 SLC16A13Q7RTY0 426 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 C20orf196Q8IYI0 205 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 ZIC4Q8N9L1 334 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 CCDC74BQ96LY2 380 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 TCEAL7Q9BRU2 100 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 DUSP23Q9BVJ7 150 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 METTL1Q9UBP6 276 aaKnown RBP17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 LOC102723996A0A087X1L8 192 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 RBP2P50120 134 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 RAB5CP51148 216 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 RSPO4Q2I0M5 234 aaPredicted RBP17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 AKIRIN2Q53H80 203 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 LHFPL2Q6ZUX7 228 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 OR2AE1Q8NHA4 323 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 C18orf12Q96KH6 178 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 GSN-AS1Q9NRJ2 163 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 ARID1AO14497 2285 aa17.49■□□□□ 0.39
SYNGAP1-227ENST00000638142 IGKV1-27A0A075B6S5 117 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 TERTO14746 1132 aaKnown RBP17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 DUSP1P28562 367 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 IL13RA2Q14627 380 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 GUK1Q16774 197 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 LYZL2Q7Z4W2 148 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 GNRHR2Q96P88 292 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 WDR54Q9H977 334 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 SLC2A9Q9NRM0 540 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 NXT1Q9UKK6 140 aaKnown RBP17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 MYO15AQ9UKN7 3530 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 SPEGQ15772 3267 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 EML6Q6ZMW3 1958 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 SYNGR3O43761 229 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 ZIC3O60481 467 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 AKR1C3P42330 323 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 ZNF616Q08AN1 781 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 LGI3Q8N145 548 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 BORCS8Q96FH0 119 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 BSCL2Q96G97 398 aaPredicted RBP17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 SYT3Q9BQG1 590 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 SCRT1Q9BWW7 348 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 PARP12Q9H0J9 701 aaKnown RBP17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 RGCCQ9H4X1 137 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 AKIRIN1Q9H9L7 192 aaPredicted RBP17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 WFDC1Q9HC57 220 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 DKKL1Q9UK85 242 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 STRAPQ9Y3F4 350 aaKnown RBP17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 RTTNQ86VV8 2226 aa17.48■□□□□ 0.39
SYNGAP1-227ENST00000638142 C7orf77A4D0Y5 90 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 NME2P1O60361 137 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 CAMLGP49069 296 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 AWAT1Q58HT5 328 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 GPR137CQ8N3F9 429 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 ZNF837Q96EG3 531 aaPredicted RBP17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 ZNF581Q9P0T4 197 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 SDK1Q7Z5N4 2213 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 MASP2O00187 686 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 DIRAS3O95661 229 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 CCL3P10147 92 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 UCP3P55916 312 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 FXYD4P59646 89 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 CLEC9AQ6UXN8 241 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 SPEM1Q8N4L4 309 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 MSI2Q96DH6 328 aaKnown RBP17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 MARS2Q96GW9 593 aaKnown RBP17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 BCO1Q9HAY6 547 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 ZNF286AQ9HBT8 521 aa17.47■□□□□ 0.39
SYNGAP1-227ENST00000638142 LY6G6EA0A0G2JKS1 128 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 ST8SIA3O43173 380 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 CELA2AP08217 269 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 CST2P09228 141 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 CBR1P16152 277 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 GLP1RP43220 463 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 RAC1P63000 192 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 TMEM42Q69YG0 159 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 SLC22A25Q6T423 547 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 FBXW12Q6X9E4 464 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 TMEM156Q8N614 296 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 OR10AD1Q8NGE0 317 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 OR1F12Q8NHA8 337 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 SF3B5Q9BWJ5 86 aaKnown RBP17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 C19orf12Q9NSK7 152 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 U3KQA8 63 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 XRCC2O43543 280 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 EPHA8P29322 1005 aaPredicted RBP17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 PHLDA2Q53GA4 152 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 OSR2Q8N2R0 312 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 MOB3AQ96BX8 217 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 PROK2Q9HC23 129 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 IL36GQ9NZH8 169 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 ZNF391Q9UJN7 358 aa17.46■□□□□ 0.39
SYNGAP1-227ENST00000638142 IGHV1-45A0A0A0MS14 117 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms