RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 IL36RNQ9UBH0 155 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 DUSP13Q9UII6 198 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.34□□□□□ -0.11
CLN3-252ENST00000636907 IGHV3-64DA0A0J9YX35 117 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 DPRXA6NFQ7 191 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 TMEM210A6NLX4 147 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 CA11O75493 328 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 H2AFB2P0C5Z0 115 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 PPP3CBP16298 524 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 PTAFRP25105 342 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 NHLRC3Q5JS37 347 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 OR13G1Q8NGZ3 307 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 SNAPC3Q92966 411 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 EMG1Q92979 244 aaKnown RBP14.34□□□□□ -0.11
CLN3-252ENST00000636907 FBXW5Q969U6 566 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 SULT4A1Q9BR01 284 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 OCSTAMPQ9BR26 566 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 C20orf85Q9H1P6 137 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 CXXC4Q9H2H0 198 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 NKIRAS2Q9NYR9 191 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 COQ3Q9NZJ6 369 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 ALG5Q9Y673 324 aa14.34□□□□□ -0.11
CLN3-252ENST00000636907 A0A1B0GWJ7 208 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 C3orf80F5H4A9 247 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 F5H5P2 479 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 IGHV3-13P01766 116 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 GRPP07492 148 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 PRKACAP17612 351 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 RPS23P62266 143 aaKnown RBP14.33□□□□□ -0.11
CLN3-252ENST00000636907 FBXL19-AS1Q494R0 122 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 BRICD5Q6PL45 260 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 OR51S1Q8NGJ8 323 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 POM121Q96HA1 1249 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 SYT3Q9BQG1 590 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 FLVCR2Q9UPI3 526 aa14.33□□□□□ -0.11
CLN3-252ENST00000636907 NKX2-6A6NCS4 301 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A10PA6NDY2 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A18PA6NE21 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A16PA6NEW6 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A20PA6NIJ5 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A8PA6NJQ4 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A7PA6NKC0 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A22PA8MWA6 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A12PA8MX19 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A5PA8MXJ8 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A23PA8MXZ1 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 ABCD4O14678 606 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 CDIPTO14735 213 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 PDCD6O75340 191 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 OR7C1O76099 320 aaPredicted RBP14.33□□□□□ -0.12
CLN3-252ENST00000636907 NDUFB6O95139 128 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A15PP0C7V4 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A13PP0C7W8 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A14PP0C7W9 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 FAM90A24PP0C7X0 464 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 ZNF735P0CB33 412 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 NAT1P18440 290 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 CBX5P45973 191 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 KLF3P57682 345 aaPredicted RBP14.33□□□□□ -0.12
CLN3-252ENST00000636907 BSPH1Q075Z2 132 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 MAB21L1Q13394 359 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 SPERTQ8NA61 448 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 NUP37Q8NFH4 326 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 CHAC2Q8WUX2 184 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 GTF3AQ92664 365 aaKnown RBP14.33□□□□□ -0.12
CLN3-252ENST00000636907 HDHD3Q9BSH5 251 aaPredicted RBP14.33□□□□□ -0.12
CLN3-252ENST00000636907 ZNF230Q9UIE0 474 aaPredicted RBP14.33□□□□□ -0.12
CLN3-252ENST00000636907 AK3Q9UIJ7 227 aa14.33□□□□□ -0.12
CLN3-252ENST00000636907 IGLV3-9A0A075B6K5 115 aa14.32□□□□□ -0.12
CLN3-252ENST00000636907 AMY2AP04746 511 aa14.32□□□□□ -0.12
CLN3-252ENST00000636907 CD300CQ08708 224 aa14.32□□□□□ -0.12
CLN3-252ENST00000636907 CDSNQ15517 529 aa14.32□□□□□ -0.12
CLN3-252ENST00000636907 ZNF554Q86TJ5 538 aa14.32□□□□□ -0.12
CLN3-252ENST00000636907 FAM58AQ8N1B3 248 aa14.32□□□□□ -0.12
CLN3-252ENST00000636907 LILRB4Q8NHJ6 448 aa14.32□□□□□ -0.12
CLN3-252ENST00000636907 DYRK2Q92630 601 aa14.32□□□□□ -0.12
CLN3-252ENST00000636907 RNASE6Q93091 150 aaKnown RBP14.32□□□□□ -0.12
CLN3-252ENST00000636907 POLDIP2Q9Y2S7 368 aa14.32□□□□□ -0.12
CLN3-252ENST00000636907 CADP27708 2225 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 TPRP12270 2363 aaKnown RBP14.31□□□□□ -0.12
CLN3-252ENST00000636907 PRSS44E7EML9 344 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 DHFRP00374 187 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 CSN2P05814 226 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 FUT3P21217 361 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 HRH1P35367 487 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 RAG2P55895 527 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 SNTB1Q13884 538 aaKnown RBP14.31□□□□□ -0.12
CLN3-252ENST00000636907 MEF2DQ14814 521 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 RBMS2Q15434 407 aaKnown RBP14.31□□□□□ -0.12
CLN3-252ENST00000636907 NKPD1Q17RQ9 610 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 RNASE10Q5GAN6 216 aaKnown RBP14.31□□□□□ -0.12
CLN3-252ENST00000636907 ATAD3CQ5T2N8 411 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 PRAMEF6Q5VXH4 476 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 HOGA1Q86XE5 327 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 C11orf53Q8IXP5 236 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 BPIFB2Q8N4F0 458 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 OR4K15Q8NH41 348 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 MAFIPQ8WZ33 124 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 SLC6A7Q99884 636 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 GINS4Q9BRT9 223 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms