RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TM2D1Q9BX74 207 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 MYOZ1Q9NP98 299 aaPredicted RBP9.18□□□□□ -0.94
CUX1-221ENST00000622516 SPRR3Q9UBC9 169 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 IGHV3-64DA0A0J9YX35 117 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 TMEM238LA0A1B0GVL6 79 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 LINC01387J3KSC0 135 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 HSPB6O14558 160 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 WT1P19544 449 aaPredicted RBP9.18□□□□□ -0.94
CUX1-221ENST00000622516 DUSP1P28562 367 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 ANKRD55Q3KP44 614 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 KRTAP27-1Q3LI81 207 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 TMEM128Q5BJH2 165 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 Q6ZSR3 168 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 OVCH2Q7RTZ1 564 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 GCNT2Q8N0V5 402 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 TNRC6AQ8NDV7 1962 aaKnown RBP9.18□□□□□ -0.94
CUX1-221ENST00000622516 LHFPL5Q8TAF8 219 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 EMG1Q92979 244 aaKnown RBP9.18□□□□□ -0.94
CUX1-221ENST00000622516 TMEM45BQ96B21 275 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 PARPBPQ9NWS1 579 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 STARD10Q9Y365 291 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 LINC00862A6NCI5 91 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 SERPINE3A8MV23 424 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 LILRA1O75019 489 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 DUS4LO95620 317 aaKnown RBP9.18□□□□□ -0.94
CUX1-221ENST00000622516 FTH1P19P0C7X4 201 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 CD46P15529 392 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 TBPP20226 339 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 MPZP25189 248 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 GPM6AP51674 278 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 PDZK1IP1Q13113 114 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 ZNF766Q5HY98 468 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 CLLU1Q5K131 121 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 SPATA46Q5T0L3 261 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 ZNF660Q6AZW8 331 aaPredicted RBP9.18□□□□□ -0.94
CUX1-221ENST00000622516 C11orf87Q6NUJ2 197 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 FOXRED2Q8IWF2 684 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 ARRDC1Q8N5I2 433 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 ZNF611Q8N823 705 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 MARVELD3Q96A59 401 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 C10orf35Q96D05 121 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 ZNF75AQ96N20 296 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 ZC4H2Q9NQZ6 224 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 IL36RNQ9UBH0 155 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 SLC7A11Q9UPY5 501 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 KLF13Q9Y2Y9 288 aaPredicted RBP9.18□□□□□ -0.94
CUX1-221ENST00000622516 ICE1Q9Y2F5 2266 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 ARHGAP21Q5T5U3 1957 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 OR7C1O76099 320 aaPredicted RBP9.17□□□□□ -0.94
CUX1-221ENST00000622516 HOXB5P09067 269 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 FXYD4P59646 89 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 S100A12P80511 92 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 TMEM42Q69YG0 159 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 TMEM17Q86X19 198 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 GALNT11Q8NCW6 608 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 TOMM40LQ969M1 308 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 MARS2Q96GW9 593 aaKnown RBP9.17□□□□□ -0.94
CUX1-221ENST00000622516 VRK1Q99986 396 aaPredicted RBP9.17□□□□□ -0.94
CUX1-221ENST00000622516 CMSS1Q9BQ75 279 aaKnown RBP9.17□□□□□ -0.94
CUX1-221ENST00000622516 C1QTNF5Q9BXJ0 243 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 ZNF552Q9H707 407 aaPredicted RBP9.17□□□□□ -0.94
CUX1-221ENST00000622516 GSKIPQ9P0R6 139 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 MBD2Q9UBB5 411 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 ANAPC10Q9UM13 185 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 ZNF816-ZNF321PA0A0X1KG74 233 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 TSPAN4O14817 238 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 BET1O15155 118 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 CD8AP01732 235 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 PDGFAP04085 211 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 C4BPBP20851 252 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 MPGP29372 298 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 ZMYND11Q15326 602 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 UNQ6126/PRO20091Q6UXV3 157 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 OSR2Q8N2R0 312 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 FDCSPQ8NFU4 85 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 SLAMF9Q96A28 289 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 FGF23Q9GZV9 251 aaPredicted RBP9.17□□□□□ -0.94
CUX1-221ENST00000622516 FAM86C1Q9NVL1 165 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 OSGIN2Q9Y236 505 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 RELNP78509 3460 aa9.17□□□□□ -0.94
CUX1-221ENST00000622516 RPA2P15927 270 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 LUMP51884 338 aaPredicted RBP9.16□□□□□ -0.94
CUX1-221ENST00000622516 FUT6P51993 359 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 SSTP61278 116 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 OR8B8Q15620 311 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 TSC22D1Q15714 1073 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 FAM189A2Q15884 450 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 LHFPL2Q6ZUX7 228 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 LHFPL1Q86WI0 220 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 METTL8Q9H825 291 aaKnown RBP9.16□□□□□ -0.94
CUX1-221ENST00000622516 KIAA2026Q5HYC2 2103 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 ANKRD11Q6UB99 2663 aaPredicted RBP9.16□□□□□ -0.94
CUX1-221ENST00000622516 CEP295Q9C0D2 2601 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 BSNQ9UPA5 3926 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 TRGV5A0A0B4J1U4 118 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 NMBP08949 121 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 SELLP14151 372 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 TAS2R46P59540 309 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 SP6Q3SY56 376 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 BOLLQ8N9W6 283 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms