RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 EDDM3BP56851 147 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 TMED1Q13445 227 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 LDLRAD2Q5SZI1 272 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 HIST2H2BDQ6DRA6 164 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 ZNF782Q6ZMW2 699 aaPredicted RBP6.16□□□□□ -1.42
CUX1-219ENST00000606749 LIAT1Q6ZQX7 453 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 SLC25A26Q70HW3 274 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 GDPD3Q7L5L3 318 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 EGFL6Q8IUX8 553 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 RDH10Q8IZV5 341 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 PRSS35Q8N3Z0 413 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 KLHDC1Q8N7A1 406 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 C11orf44Q8N8P7 122 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 DTX3Q8N9I9 347 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 ASCC1Q8N9N2 400 aaKnown RBP6.16□□□□□ -1.42
CUX1-219ENST00000606749 CCDC54Q8NEL0 328 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 OR10H4Q8NGA5 316 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 OR11H6Q8NGC7 330 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 OR8J1Q8NGP2 316 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 OR13D1Q8NGV5 346 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 OR2T6Q8NHC8 308 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 SLAMF9Q96A28 289 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 RNF166Q96A37 237 aaPredicted RBP6.16□□□□□ -1.42
CUX1-219ENST00000606749 EME1Q96AY2 570 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 C10orf35Q96D05 121 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 SNX22Q96L94 193 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 CEP19Q96LK0 163 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 ADI1Q9BV57 179 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 CDCA4Q9BXL8 241 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 NPFFR1Q9GZQ6 430 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 CHST5Q9GZS9 411 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 PLEKHA1Q9HB21 404 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 SEBOXQ9HB31 216 aaPredicted RBP6.16□□□□□ -1.42
CUX1-219ENST00000606749 ENOPH1Q9UHY7 261 aa6.16□□□□□ -1.42
CUX1-219ENST00000606749 TET2Q6N021 2002 aaPredicted RBP6.15□□□□□ -1.42
CUX1-219ENST00000606749 TMEM82A0PJX8 343 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 A6NDX4 124 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 ODF3BA8MYP8 253 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 GATBO75879 557 aaKnown RBP6.15□□□□□ -1.42
CUX1-219ENST00000606749 IGHA1P01876 353 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 RBP4P02753 201 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 IGHV1-8P0DP01 117 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 VSIG10L2P0DP72 767 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 FCGR1AP12314 374 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 KIR3DL2P43630 455 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 RASSF2P50749 326 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 ISL1P61371 349 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 ZNF85Q03923 595 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 MEF2CQ06413 473 aaPredicted RBP6.15□□□□□ -1.42
CUX1-219ENST00000606749 FAM189A2Q15884 450 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 SSX2Q16385 188 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 PLA1AQ53H76 456 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 C1orf146Q5VVC0 180 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 ZNF626Q68DY1 528 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 TCF23Q7RTU1 214 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 ENTHD1Q8IYW4 607 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 OR8H2Q8N162 312 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 Q8N2B8 174 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 OR52N4Q8NGI2 321 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 RPS4Y2Q8TD47 263 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 RFKQ969G6 155 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 CENPNQ96H22 339 aaPredicted RBP6.15□□□□□ -1.42
CUX1-219ENST00000606749 NKX3-1Q99801 234 aaPredicted RBP6.15□□□□□ -1.42
CUX1-219ENST00000606749 OSBPL10Q9BXB5 764 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 GABARAPL3Q9BY60 117 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 ZNF702PQ9H963 129 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 SERTAD4Q9NUC0 356 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 OAZ3Q9UMX2 235 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 TCF19Q9Y242 345 aa6.15□□□□□ -1.42
CUX1-219ENST00000606749 TBL2Q9Y4P3 447 aaKnown RBP6.15□□□□□ -1.42
CUX1-219ENST00000606749 TGP01266 2768 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 IGKV1-9A0A0C4DH69 117 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 LOC107986453A0A1B0GWG9 222 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 hADV38S2A0JD32 116 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 G3V4G9 280 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 PSPNO60542 156 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 ATP5HO75947 161 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 HAND1O96004 215 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 ISG15P05161 165 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 UBCP0CG48 685 aaKnown RBP6.14□□□□□ -1.43
CUX1-219ENST00000606749 CALCBP10092 127 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 ATF1P18846 271 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 BCL3P20749 454 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 PEX2P28328 305 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 DUSP1P28562 367 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 NPBWR2P48146 333 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 RBP2P50120 134 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 DYNLT3P51808 116 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 ATP1B3P54709 279 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 MTCP1P56278 107 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 OR12D2P58182 307 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 ACTA2P62736 377 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 ACTG2P63267 376 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 ACTC1P68032 377 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 ACTA1P68133 377 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 DYNC1I2Q13409 638 aaKnown RBP6.14□□□□□ -1.43
CUX1-219ENST00000606749 EDDM3AQ14507 147 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 HABP2Q14520 560 aaPredicted RBP6.14□□□□□ -1.43
CUX1-219ENST00000606749 ZNF146Q15072 292 aa6.14□□□□□ -1.43
CUX1-219ENST00000606749 CNN3Q15417 329 aaKnown RBP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms