RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 C17orf98A8MV24 154 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 FBXO24O75426 580 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 OPN1MWP04001 364 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 OPN1MW2P0DN77 364 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 OPN1MW3P0DN78 364 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 GABRR1P24046 479 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 MPZP25189 248 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 DUSP1P28562 367 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 DLX6P56179 175 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 IL24Q13007 206 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 UBE2V2Q15819 145 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 C12orf73Q69YU5 71 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 CCBE1Q6UXH8 406 aaPredicted RBP14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 SLC25A26Q70HW3 274 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 CATSPERDQ86XM0 798 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 RPS4Y2Q8TD47 263 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 EMG1Q92979 244 aaKnown RBP14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 PKIBQ9C010 78 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 ZNF702PQ9H963 129 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 TCF19Q9Y242 345 aa14.21□□□□□ -0.13
SHKBP1-223ENST00000600552 IGKV1-27A0A075B6S5 117 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 A0A1W2PQL4 384 aaPredicted RBP14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 TMEM82A0PJX8 343 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 METTL15A6NJ78 407 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 SERPINA3P01011 423 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 POU3F4P49335 361 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 OR12D2P58182 307 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 ERVK11-1P61568 191 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 SLC34A1Q06495 639 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 CNN3Q15417 329 aaKnown RBP14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 ATP6AP1Q15904 470 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 BEAN1Q3B7T3 259 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 LIAT1Q6ZQX7 453 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 RDH10Q8IZV5 341 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 NDNFQ8TB73 568 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 BCAS4Q8TDM0 211 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 CFHR4Q92496 578 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 FOXRED1Q96CU9 486 aaPredicted RBP14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 R3HDM4Q96D70 268 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 BORCS8Q96FH0 119 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 ZNF714Q96N38 554 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 RIBC2Q9H4K1 309 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 IL36RNQ9UBH0 155 aa14.2□□□□□ -0.14
SHKBP1-223ENST00000600552 MEGF11A6BM72 1044 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 A6NDX4 124 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 FAM90A8PA6NJQ4 464 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 F2RL2O00254 374 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 IGHA1P01876 353 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 IGHV1-8P0DP01 117 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 POLR2IP36954 125 aaKnown RBP14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 FUT6P51993 359 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 ACTA2P62736 377 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 ACTG2P63267 376 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 ACTC1P68032 377 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 ACTA1P68133 377 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 GRK1Q15835 563 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 LDLRAD2Q5SZI1 272 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 TRAPPC6BQ86SZ2 158 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 ZDHHC13Q8IUH4 622 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 ZNF676Q8N7Q3 588 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 DTX3Q8N9I9 347 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 MALSU1Q96EH3 234 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 CDCA4Q9BXL8 241 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 PRSS22Q9GZN4 317 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 MMP28Q9H239 520 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 WARS2Q9UGM6 360 aaKnown RBP14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 GNG8Q9UK08 70 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 TBL2Q9Y4P3 447 aaKnown RBP14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 NOTCH3Q9UM47 2321 aa14.19□□□□□ -0.14
SHKBP1-223ENST00000600552 A0A1W2PRX2 142 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 hADV38S2A0JD32 116 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 ZNF737O75373 536 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 GATBO75879 557 aaKnown RBP14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 HAND1O96004 215 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 OR2T7P0C7T2 308 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 CCL1P22362 96 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 FASP25445 335 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 EFNB1P98172 346 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 TMEM95Q3KNT9 176 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 TP53I3Q53FA7 332 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 OXLD1Q5BKU9 147 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 OR8H2Q8N162 312 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 SNX22Q96L94 193 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 CITED2Q99967 270 aaPredicted RBP14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 SERTAD4Q9NUC0 356 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 RBFOX1Q9NWB1 397 aaKnown RBP14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 DSCAML1Q8TD84 2053 aa14.18□□□□□ -0.14
SHKBP1-223ENST00000600552 LOC107986453A0A1B0GWG9 222 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 DHRS7CA6NNS2 312 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 VGLL3A8MV65 326 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 ODF3BA8MYP8 253 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 SIRPB1O00241 398 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 CYB5AP00167 134 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 PRKACAP17612 351 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 BCL3P20749 454 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 PEX2P28328 305 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 NPBWR2P48146 333 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 ATP1B3P54709 279 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 BLCAPP62952 87 aa14.17□□□□□ -0.14
SHKBP1-223ENST00000600552 EMX1Q04741 257 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms