RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 METAP1DQ6UB28 335 aaPredicted RBP11.65□□□□□ -0.54
LIG1-218ENST00000599322 GDPD3Q7L5L3 318 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 CALHM1Q8IU99 346 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 PDZD9Q8IXQ8 264 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 C8orf59Q8N0T1 100 aaPredicted RBP11.65□□□□□ -0.54
LIG1-218ENST00000599322 TMEM86BQ8N661 226 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 SSMEM1Q8WWF3 244 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 SLAMF9Q96A28 289 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 ADAT3Q96EY9 351 aaPredicted RBP11.65□□□□□ -0.54
LIG1-218ENST00000599322 ZNF48Q96MX3 618 aaPredicted RBP11.65□□□□□ -0.54
LIG1-218ENST00000599322 OPALINQ96PE5 141 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 ZCCHC4Q9H5U6 513 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 HEXA-AS1Q9H8Q6 139 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 FGF20Q9NP95 211 aaPredicted RBP11.65□□□□□ -0.54
LIG1-218ENST00000599322 SIRT7Q9NRC8 400 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 ZNF222Q9UK12 451 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 EXOSC1Q9Y3B2 195 aaKnown RBP11.65□□□□□ -0.54
LIG1-218ENST00000599322 POMT1Q9Y6A1 747 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 HSPE1-MOB4S4R3N1 261 aa11.65□□□□□ -0.54
LIG1-218ENST00000599322 TENM1Q9UKZ4 2725 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 OR4C45A6NMZ5 311 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 TK1P04183 234 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 HKR1P10072 659 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 COMPP49747 757 aaPredicted RBP11.64□□□□□ -0.55
LIG1-218ENST00000599322 CCDC58Q4VC31 144 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 RPL22L1Q6P5R6 122 aaKnown RBP11.64□□□□□ -0.55
LIG1-218ENST00000599322 Q6YL49 198 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 BATF2Q8N1L9 274 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 FGFRL1Q8N441 504 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 TMEM80Q96HE8 168 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 DCLRE1BQ9H816 532 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 ISG20L2Q9H9L3 353 aaKnown RBP11.64□□□□□ -0.55
LIG1-218ENST00000599322 HES4Q9HCC6 221 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 TNFRSF19Q9NS68 423 aa11.64□□□□□ -0.55
LIG1-218ENST00000599322 FUOMA2VDF0 154 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 EFCAB10A6NFE3 127 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 TFF1P04155 84 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 PEX2P28328 305 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 UBE2E1P51965 193 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 LGALS4P56470 323 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 EDDM3BP56851 147 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 ERVK11-1P61568 191 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 COL10A1Q03692 680 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 ACSM1Q08AH1 577 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 FAM58AQ8N1B3 248 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 CD177Q8N6Q3 437 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 OR13C9Q8NGT0 318 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 GPR148Q8TDV2 347 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 APH1BQ8WW43 257 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 SNX22Q96L94 193 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 GPER1Q99527 375 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 JAM3Q9BX67 310 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 PRDM13Q9H4Q3 707 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 ELL3Q9HB65 397 aaPredicted RBP11.63□□□□□ -0.55
LIG1-218ENST00000599322 RHOFQ9HBH0 211 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 MTCH1Q9NZJ7 389 aa11.63□□□□□ -0.55
LIG1-218ENST00000599322 MDFIC2A0A1B0GVS7 189 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 MEIOCA2RUB1 952 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 K7N7A8 449 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 SH2D1BO14796 132 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 NPFFO15130 113 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 FCN3O75636 299 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 MT-ND2P03891 347 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 TMEM225BP0DP42 221 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 PRKACAP17612 351 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 RAB3AP20336 220 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 GABRR1P24046 479 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 CAPGP40121 348 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 CEBPDP49716 269 aaPredicted RBP11.62□□□□□ -0.55
LIG1-218ENST00000599322 ERVFRD-1P60508 538 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 PDZK1IP1Q13113 114 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 TUSC1Q2TAM9 212 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 SPIN3Q5JUX0 258 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 CNIH3Q8TBE1 160 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 BABAM2Q9NXR7 383 aa11.62□□□□□ -0.55
LIG1-218ENST00000599322 DIMT1Q9UNQ2 313 aaKnown RBP11.62□□□□□ -0.55
LIG1-218ENST00000599322 IGKV1-27A0A075B6S5 117 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 A0A0U1RQK1 487 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 A0A1B0GUS0 222 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 hADV38S2A0JD32 116 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 POM121CA8CG34 1229 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 SULT1B1O43704 296 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 ANGPTL7O43827 346 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 WBP4O75554 376 aaKnown RBP11.61□□□□□ -0.55
LIG1-218ENST00000599322 ALX3O95076 343 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 ZFPL1O95159 310 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 CLIC3O95833 236 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 HAND1O96004 215 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 MELTFP08582 738 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 BMXP51813 675 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 RPL15P61313 204 aaKnown RBP11.61□□□□□ -0.55
LIG1-218ENST00000599322 PPP3R1P63098 170 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 MEF2CQ06413 473 aaPredicted RBP11.61□□□□□ -0.55
LIG1-218ENST00000599322 SMN1Q16637 294 aaKnown RBP11.61□□□□□ -0.55
LIG1-218ENST00000599322 AWAT1Q58HT5 328 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 SAXO1Q8IYX7 474 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 STX19Q8N4C7 294 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 OR4M1Q8NGD0 313 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 OR4F5Q8NH21 305 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 S100A13Q99584 98 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms