RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 DHRS7BQ6IAN0 325 aaPredicted RBP13.37□□□□□ -0.27
UPF1-204ENST00000596842 ZNF705AQ6ZN79 300 aaPredicted RBP13.37□□□□□ -0.27
UPF1-204ENST00000596842 LYZL2Q7Z4W2 148 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 PPP1R3BQ86XI6 285 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 SLC25A45Q8N413 288 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 POC1AQ8NBT0 407 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 OR9K2Q8NGE7 335 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 EMG1Q92979 244 aaKnown RBP13.37□□□□□ -0.27
UPF1-204ENST00000596842 MRPL13Q9BYD1 178 aaKnown RBP13.37□□□□□ -0.27
UPF1-204ENST00000596842 KCNIP3Q9Y2W7 256 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 IGHV3-9P01782 118 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 OR5AC1P0C628 307 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 ZNF44P15621 663 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 GLP1RP43220 463 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 GAMTQ14353 236 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 IL34Q6ZMJ4 242 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 PRRX2Q99811 253 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 CNTNAP3Q9BZ76 1288 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 MYOTQ9UBF9 498 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 ESPL1Q14674 2120 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 EML6Q6ZMW3 1958 aa13.37□□□□□ -0.27
UPF1-204ENST00000596842 SHISA7A6NL88 538 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 SLC31A2O15432 143 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 SCAF4O95104 1147 aaKnown RBP13.36□□□□□ -0.27
UPF1-204ENST00000596842 SPIN3Q5JUX0 258 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 SYT13Q7L8C5 426 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 OR11L1Q8NGX0 322 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 EDARADDQ8WWZ3 215 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 M0R135 149 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 MMP7P09237 267 aaPredicted RBP13.36□□□□□ -0.27
UPF1-204ENST00000596842 ZNF84P51523 738 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 C5orf24Q7Z6I8 188 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 KDF1Q8NAX2 398 aaPredicted RBP13.36□□□□□ -0.27
UPF1-204ENST00000596842 FAM213BQ8TBF2 198 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 ZNF799Q96GE5 643 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 LYZL4Q96KX0 146 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 SH3BGRL3Q9H299 93 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 ZDBF2Q9HCK1 2354 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 ZFAND5O76080 213 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 NAAAQ02083 359 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 PHYHD1Q5SRE7 291 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 OR5L2Q8NGL0 311 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 MRGPRX4Q96LA9 322 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 AQP10Q96PS8 301 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 ZNF700Q9H0M5 742 aa13.36□□□□□ -0.27
UPF1-204ENST00000596842 SMCO3A2RU48 225 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 AP4M1O00189 453 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 FBP1P09467 338 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 RBP2P50120 134 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 NHLH2Q02577 135 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 SNAI3Q3KNW1 292 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 AWAT1Q58HT5 328 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 PLXDC2Q6UX71 529 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 TMEM182Q6ZP80 229 aaPredicted RBP13.35□□□□□ -0.27
UPF1-204ENST00000596842 TMEM100Q9NV29 134 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 PARPBPQ9NWS1 579 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 OSGIN2Q9Y236 505 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 PMS2P1A4D2B8 440 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 ECH1Q13011 328 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 SMRP1Q8NCR6 262 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 RTN4IP1Q8WWV3 396 aaPredicted RBP13.35□□□□□ -0.27
UPF1-204ENST00000596842 OXGR1Q96P68 337 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 ULBP2Q9BZM5 246 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 MAGT1Q9H0U3 335 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 CARHSP1Q9Y2V2 147 aaKnown RBP13.35□□□□□ -0.27
UPF1-204ENST00000596842 GLB1P16278 677 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 PIGYQ3MUY2 71 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 C9orf135Q5VTT2 229 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 FBXW12Q6X9E4 464 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 CCDC54Q8NEL0 328 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 OIT3Q8WWZ8 545 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 MISP3Q96FF7 219 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 OCSTAMPQ9BR26 566 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 GPR27Q9NS67 375 aa13.35□□□□□ -0.27
UPF1-204ENST00000596842 A0A1W2PPE2 198 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 PHF1O43189 567 aaPredicted RBP13.34□□□□□ -0.27
UPF1-204ENST00000596842 CST4P01036 141 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 MSR1P21757 451 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 NXPH1P58417 271 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 SPEM2Q0P670 501 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 MAJINQ3KP22 176 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 SLC22A25Q6T423 547 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 P4HA3Q7Z4N8 544 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 TMEM68Q96MH6 324 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 MOB1AQ9H8S9 216 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 PLA2G2EQ9NZK7 142 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 ZNF728P0DKX0 622 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 PNLIPRP3Q17RR3 467 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 MAML2Q8IZL2 1156 aaPredicted RBP13.34□□□□□ -0.27
UPF1-204ENST00000596842 TMEM217Q8N7C4 229 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 PLPP5Q8NEB5 264 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 RASL10BQ96S79 203 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 ZNF442Q9H7R0 627 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 KCNJ16Q9NPI9 418 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 WNT16Q9UBV4 365 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 LOC102724200A0A096LPH7 203 aaPredicted RBP13.34□□□□□ -0.27
UPF1-204ENST00000596842 TRBV6-7A0A0A0MS04 114 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 DCDP81605 110 aaKnown RBP13.34□□□□□ -0.27
UPF1-204ENST00000596842 CLEC12BQ2HXU8 276 aa13.34□□□□□ -0.27
UPF1-204ENST00000596842 GUSBP11Q6P575 273 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms