RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 PURGQ9UJV8 347 aaKnown RBP3.22□□□□□ -1.89
SMCHD1-208ENST00000583344 SPACA6W5XKT8 324 aa3.22□□□□□ -1.89
SMCHD1-208ENST00000583344 PLXND1Q9Y4D7 1925 aa3.22□□□□□ -1.89
SMCHD1-208ENST00000583344 TRIOBPQ9H2D6 2365 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TRAV18A0A075B6X5 111 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 A0A087WUJ7 227 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 A0A0G2JN53 185 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 PQLC2LA1A4F0 135 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 C17orf105B2RV13 164 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 E5RGE8 158 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 F5H5P2 479 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 NPIPB9F8W1W9 429 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TEX46H3BTG2 121 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 M0R296 226 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 LGALS8O00214 317 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 ARPC1BO15143 372 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 FGF16O43320 207 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 RAD1O60671 282 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 RDH16O75452 317 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 UPK3AO75631 287 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TOXO94900 526 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 OR2F2O95006 317 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TXNDC12O95881 172 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 GP1BAP07359 652 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 SLC35G4P0C7Q5 338 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 UBBP0CG47 229 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 UBCP0CG48 685 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 CLUP10909 449 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 CPMP14384 443 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 HIST1H1CP16403 213 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 CDK2P24941 298 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 PEBP1P30086 187 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 RORAP35398 523 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 P2RY2P41231 377 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 METAP1P53582 386 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 HCCSP53701 268 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 PRMT2P55345 433 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 H2BFSP57053 126 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TAS2R20P59543 309 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 B2MP61769 119 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 RPS4XP62701 263 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 RPS27AP62979 156 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 UBA52P62987 128 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 BTN3A2P78410 334 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 NTHL1P78549 312 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 S100A12P80511 92 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 DCDP81605 110 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 CYCSP99999 105 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TNFRSF17Q02223 184 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 STX4Q12846 297 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 OR2F1Q13607 317 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 ELAVL3Q14576 367 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF345Q14585 488 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF141Q15928 474 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 ODF4Q2M2E3 257 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 RNF212Q495C1 297 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 Q499Y3 187 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TP53I3Q53FA7 332 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TRMT12Q53H54 448 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 SPATA46Q5T0L3 261 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 DCST2Q5T1A1 773 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 MRPL2Q5T653 305 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 LINC01590Q5TEZ4 76 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 SLC25A25Q6KCM7 469 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 ULK3Q6PHR2 472 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 KRTAP5-5Q701N2 237 aaPredicted RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 PGAP1Q75T13 922 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 CHMP1BQ7LBR1 199 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF550Q7Z398 422 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 VN1R4Q7Z5H5 301 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 HMGN2P46Q86SG4 172 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF679Q8IYX0 411 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 FADS6Q8N9I5 356 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TMEM229BQ8NBD8 167 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 PXT1Q8NFP0 134 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 OR52E2Q8NGJ4 325 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 OR13C5Q8NGS8 318 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 OR6S1Q8NH40 331 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 OR51A7Q8NH64 312 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 PFN4Q8NHR9 129 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 LGALS14Q8TCE9 139 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 GPR148Q8TDV2 347 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 GPX8Q8TED1 209 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 MCHR2Q969V1 340 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 MARC2Q969Z3 335 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 TCEAL4Q96EI5 215 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 CXorf58Q96LI9 332 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 OR2A5Q96R48 311 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 CNN2Q99439 309 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 NRTNQ99748 197 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 SLC25A21Q9BQT8 299 aaPredicted RBP3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 EDEM2Q9BV94 578 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 SLC19A3Q9BZV2 496 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 SLITRK2Q9H156 845 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 VCX2Q9H322 139 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 AUNIPQ9H7T9 357 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 ZC4H2Q9NQZ6 224 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 CA10Q9NS85 328 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 FBXL4Q9UKA2 621 aa3.21□□□□□ -1.9
SMCHD1-208ENST00000583344 NSG2Q9Y328 171 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms