RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RUNX3Q13761 415 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 PRSS8Q16651 343 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 ASPHD2Q6ICH7 369 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 PRSS54Q6PEW0 395 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 RAB42Q8N4Z0 105 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 CXorf40AQ8TE69 158 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 SARAFQ96BY9 339 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 SCARF2Q96GP6 870 aaPredicted RBP9.55□□□□□ -0.88
CLK3-226ENST00000569406 BTF3L4Q96K17 158 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 TIMP4Q99727 224 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 ZNF703Q9H7S9 590 aaPredicted RBP9.55□□□□□ -0.88
CLK3-226ENST00000569406 CES1P1Q9UKY3 287 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 VSIG4Q9Y279 399 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 TMED7Q9Y3B3 224 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 LIPGQ9Y5X9 500 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 FANCMQ8IYD8 2048 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 JTBO76095 146 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 CSTBP04080 98 aaKnown RBP9.55□□□□□ -0.88
CLK3-226ENST00000569406 ZBTB25P24278 435 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 PSMB10P40306 273 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 HLA-DRB3P79483 266 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 CST6Q15828 149 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 OR52R1Q8NGF1 315 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 LYPD6BQ8NI32 183 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 GLIPR2Q9H4G4 154 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 TMEM74BQ9NUR3 256 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 SLC17A4Q9Y2C5 497 aa9.55□□□□□ -0.88
CLK3-226ENST00000569406 A0A1W2PP55 124 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 RBFOX3A6NFN3 312 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 CNIH1O95406 144 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 CYB5AP00167 134 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 SOX2P48431 317 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 MLC1Q15049 377 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 AMZ1Q400G9 498 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 COA6Q5JTJ3 125 aaKnown RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 GJD3Q8N144 294 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 TMEM256Q8N2U0 113 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 CLEC1AQ8NC01 280 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 OR6K6Q8NGW6 343 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 FLVCR1-AS1Q8TAF5 88 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 MCHR1Q99705 422 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 SRD5A3Q9H8P0 318 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 C10orf142B7Z368 130 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 TAAR5O14804 337 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 TOX4O94842 621 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 STAG3L2P0CL84 134 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 AZU1P20160 251 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 GRPRP30550 384 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 GFRA1P56159 465 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 CLDN2P57739 230 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 SUMO1P63165 101 aaKnown RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 ZNF92Q03936 586 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 PRDX1Q06830 199 aaKnown RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 GPM6BQ13491 265 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 EXOSC7Q15024 291 aaKnown RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 AMMECR1LQ6DCA0 310 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 DMKNQ6E0U4 476 aaPredicted RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 PARM1Q6UWI2 310 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 MBOAT2Q6ZWT7 520 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 BHLHA15Q7RTS1 189 aaPredicted RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 OR4N5Q8IXE1 308 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 AQP10Q96PS8 301 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 GFI1Q99684 422 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 CUTCQ9NTM9 273 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 FRRS1LQ9P0K9 344 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 UQCR10Q9UDW1 63 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 SMPXQ9UHP9 88 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 KCNE3Q9Y6H6 103 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 WSB1Q9Y6I7 421 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 ARHGEF17Q96PE2 2063 aaPredicted RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 TRBV6-7A0A0A0MS04 114 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 ZNF736B4DX44 427 aaPredicted RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 B9A039 149 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 RBFOX2O43251 390 aaKnown RBP eCLIP9.54□□□□□ -0.88
CLK3-226ENST00000569406 HMGN2P05204 90 aaKnown RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 LAMP2P13473 410 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 FCGR2CP31995 323 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 TAS2R30P59541 319 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 PDGFRLQ15198 375 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 ZNF627Q7L945 461 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 OR52M1Q8NGK5 317 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 OR5P2Q8WZ92 322 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 CNRIP1Q96F85 164 aaPredicted RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 NMNAT2Q9BZQ4 307 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 PATZ1Q9HBE1 687 aaKnown RBP9.54□□□□□ -0.88
CLK3-226ENST00000569406 ANKRD10Q9NXR5 420 aa9.54□□□□□ -0.88
CLK3-226ENST00000569406 COL6A3P12111 3177 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 A0A1W2PQF6 199 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 MAS1P04201 325 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 CCL20P78556 96 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 SPATA45Q537H7 98 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 BOD1L2Q8IYS8 172 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 OR2M7Q8NG81 312 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 OR2Z1Q8NG97 314 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 MRPL13Q9BYD1 178 aaKnown RBP9.53□□□□□ -0.88
CLK3-226ENST00000569406 NEUROD4Q9HD90 331 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 TMEM106BQ9NUM4 274 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 ZNF581Q9P0T4 197 aa9.53□□□□□ -0.88
CLK3-226ENST00000569406 MRPS28Q9Y2Q9 187 aaKnown RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms