RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ZNF581Q9P0T4 197 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 OR5V1Q9UGF6 321 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 MAB21L2Q9Y586 359 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 INSIG2Q9Y5U4 225 aa11.46□□□□□ -0.57
CLN3-235ENST00000568497 IRGMA1A4Y4 181 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 TMEM212A6NML5 194 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 OR2AT4A6NND4 320 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 H0YJX3 145 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 PIN1P1O15428 100 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 NXPH2O95156 264 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 RNASE1P07998 156 aaKnown RBP11.45□□□□□ -0.58
CLN3-235ENST00000568497 CCDC159P0C7I6 412 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 IGHV4-38-2P0DP08 117 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 ZNF12P17014 697 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 RPS11P62280 158 aaKnown RBP eCLIP11.45□□□□□ -0.58
CLN3-235ENST00000568497 SNCBQ16143 134 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 KLF17Q5JT82 389 aaPredicted RBP11.45□□□□□ -0.58
CLN3-235ENST00000568497 FAM27D1Q5T7N8 215 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 DMKNQ6E0U4 476 aaPredicted RBP11.45□□□□□ -0.58
CLN3-235ENST00000568497 RPL22L1Q6P5R6 122 aaKnown RBP11.45□□□□□ -0.58
CLN3-235ENST00000568497 BTN2A1Q7KYR7 527 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 SATL1Q86VE3 508 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 POC1AQ8NBT0 407 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 TMEM185AQ8NFB2 350 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 OR52N4Q8NGI2 321 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 OR10K1Q8NGX5 313 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 OR10Z1Q8NGY1 313 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 OR52N1Q8NH53 320 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 RPS4Y2Q8TD47 263 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 H1FXQ92522 213 aaKnown RBP11.45□□□□□ -0.58
CLN3-235ENST00000568497 ZCCHC4Q9H5U6 513 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 ABCB9Q9NP78 766 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 ZNF222Q9UK12 451 aa11.45□□□□□ -0.58
CLN3-235ENST00000568497 LSM2Q9Y333 95 aaKnown RBP11.45□□□□□ -0.58
CLN3-235ENST00000568497 TRAV8-7A0A075B6U6 113 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 IGHV2-70DA0A0C4DH43 119 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 MDFIC2A0A1B0GVS7 189 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 A0A1W2PRD5 423 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 A0A1W2PRF3 423 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 A0A1W2PRM7 423 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 TIMM23O14925 209 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 GATBO75879 557 aaKnown RBP11.44□□□□□ -0.58
CLN3-235ENST00000568497 HCKP08631 526 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 HSMCR30P0CW71 290 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 NDUFB7P17568 137 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 CELP19835 753 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 GATA3P23771 443 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 CRHBPP24387 322 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 FUT6P51993 359 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 WNT4P56705 351 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 FGF12P61328 243 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 ARF6P62330 175 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 SLC35A2P78381 396 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 IRF3Q14653 427 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 ARMCX4Q5H9R4 360 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 RUSC1-AS1Q66K80 236 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 NLRC3Q7RTR2 1065 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 ZNF573Q86YE8 665 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 OR4M1Q8NGD0 313 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 ZNF671Q8TAW3 534 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 WFDC12Q8WWY7 111 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 DACT3Q96B18 629 aaPredicted RBP11.44□□□□□ -0.58
CLN3-235ENST00000568497 SMIM19Q96E16 107 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 C1orf147Q96MC9 270 aaPredicted RBP11.44□□□□□ -0.58
CLN3-235ENST00000568497 OPALINQ96PE5 141 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 OR14A2Q96R54 314 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 NRIP2Q9BQI9 281 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 TMED9Q9BVK6 235 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 VCX3BQ9H321 246 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 NEK6Q9HC98 313 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 SCN3BQ9NY72 215 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 LRCH1Q9Y2L9 728 aa11.44□□□□□ -0.58
CLN3-235ENST00000568497 DHRS7CA6NNS2 312 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 A8MXK9 166 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 SERPINA3P01011 423 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 OCM2P0CE71 109 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 OCMP0CE72 109 aaPredicted RBP11.43□□□□□ -0.58
CLN3-235ENST00000568497 CFHR2P36980 270 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 OR3A4PP47883 348 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 CAPZA1P52907 286 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 CNN3Q15417 329 aaKnown RBP11.43□□□□□ -0.58
CLN3-235ENST00000568497 MED22Q15528 200 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 ZNF788Q6ZQV5 615 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 PNKDQ8N490 385 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 DNAAF1Q8NEP3 725 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 RAB40AQ8WXH6 277 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 EMG1Q92979 244 aaKnown RBP11.43□□□□□ -0.58
CLN3-235ENST00000568497 TMEM203Q969S6 136 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 PCGF1Q9BSM1 259 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 TRIM36Q9NQ86 728 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 ING3Q9NXR8 418 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 MMP24Q9Y5R2 645 aa11.43□□□□□ -0.58
CLN3-235ENST00000568497 TMEM82A0PJX8 343 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 RGS10O43665 173 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 NDUFB3O43676 98 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 CDRT1O95170 752 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 MUC1P15941 1255 aaPredicted RBP11.42□□□□□ -0.58
CLN3-235ENST00000568497 PRKACAP17612 351 aa11.42□□□□□ -0.58
CLN3-235ENST00000568497 EEF1B2P24534 225 aaKnown RBP11.42□□□□□ -0.58
CLN3-235ENST00000568497 MPZP25189 248 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms