RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 UBE2UQ5VVX9 321 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 CEACAM19Q7Z692 300 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 DACT3Q96B18 629 aaPredicted RBP16.23■□□□□ 0.19
CLN3-225ENST00000566824 CLN8Q9UBY8 286 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 KCNS2Q9ULS6 477 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 POLR3KQ9Y2Y1 108 aaPredicted RBP16.23■□□□□ 0.19
CLN3-225ENST00000566824 MAB21L2Q9Y586 359 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 TRAV20A0A0B4J274 112 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 FOXH1O75593 365 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 SFTPBP07988 381 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 BDKRB2P30411 391 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 GABRA2P47869 451 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 OR3A4PP47883 348 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 FABP5Q01469 135 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 DDI2Q5TDH0 399 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 C1orf229Q6ZS94 237 aaPredicted RBP16.22■□□□□ 0.19
CLN3-225ENST00000566824 NLRC3Q7RTR2 1065 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 MKXQ8IYA7 352 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 SVOPQ8N4V2 548 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 MS4A15Q8N5U1 240 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 NEK6Q9HC98 313 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 TMEM138Q9NPI0 162 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 OR14J1Q9UGF5 321 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 ZFHX3Q15911 3703 aa16.22■□□□□ 0.19
CLN3-225ENST00000566824 MAS1P04201 325 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 ALDOBP05062 364 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 TMEM225BP0DP42 221 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 ADRA2CP18825 462 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 DUSP1P28562 367 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 PRDX2P32119 198 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 SNU13P55769 128 aaKnown RBP16.21■□□□□ 0.19
CLN3-225ENST00000566824 PPP3R1P63098 170 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 SMIM21Q3B7S5 101 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 FAM120AOSQ5T036 256 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 FAHD2BQ6P2I3 314 aaPredicted RBP16.21■□□□□ 0.19
CLN3-225ENST00000566824 ZNRF1Q8ND25 227 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 FAHD2AQ96GK7 314 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 TMPRSS13Q9BYE2 586 aa16.21■□□□□ 0.19
CLN3-225ENST00000566824 ELL3Q9HB65 397 aaPredicted RBP16.21■□□□□ 0.19
CLN3-225ENST00000566824 SIGLEC5O15389 551 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 KDM4BO94953 1096 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 CPT2P23786 658 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 LRRTM1Q86UE6 522 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 LYPD6Q86Y78 171 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 OR10K1Q8NGX5 313 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 TNFAIP8L1Q8WVP5 186 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 ST8SIA4Q92187 359 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 EMG1Q92979 244 aaKnown RBP16.2■□□□□ 0.18
CLN3-225ENST00000566824 SDSLQ96GA7 329 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 GPER1Q99527 375 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 OPN4Q9UHM6 478 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 FOXJ3Q9UPW0 622 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 NAV3Q8IVL0 2385 aa16.2■□□□□ 0.18
CLN3-225ENST00000566824 LOC105371242A0A075B767 164 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 MAGEB3O15480 346 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 CDRT1O95170 752 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 KNG1P01042 644 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 UCHL1P09936 223 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 PRKACAP17612 351 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 PSMB9P28065 219 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 ZNF93P35789 620 aaPredicted RBP16.19■□□□□ 0.18
CLN3-225ENST00000566824 IL13RA1P78552 427 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 DCAF12L2Q5VW00 463 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 SAXO1Q8IYX7 474 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 FAM58AQ8N1B3 248 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 DNTTIP1Q9H147 329 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 HMG20AQ9NP66 347 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 CKLFQ9UBR5 152 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 OR5V1Q9UGF6 321 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 INSIG2Q9Y5U4 225 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 IGHV2-70DA0A0C4DH43 119 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 NKX6-3A6NJ46 265 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 RGS9O75916 674 aaPredicted RBP16.19■□□□□ 0.18
CLN3-225ENST00000566824 MAPK3P27361 379 aaPredicted RBP16.19■□□□□ 0.18
CLN3-225ENST00000566824 GABRA5P31644 462 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 PTGFRP43088 359 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 NEDD8Q15843 81 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 ASCL4Q6XD76 172 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 BTN2A1Q7KYR7 527 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 SLC36A1Q7Z2H8 476 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 ZSCAN4Q8NAM6 433 aaPredicted RBP16.19■□□□□ 0.18
CLN3-225ENST00000566824 RAB40AQ8WXH6 277 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 GFI1Q99684 422 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 FAM192AQ9GZU8 254 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 TMEM160Q9NX00 188 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 NDUFB11Q9NX14 153 aa16.19■□□□□ 0.18
CLN3-225ENST00000566824 PPIAL4CA0A0B4J2A2 164 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 A0A0G2JMP0 313 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 A0A0X1KG70 313 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 NDUFB3O43676 98 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 CRLF1O75462 422 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 CYB5AP00167 134 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 HOXB4P17483 251 aaPredicted RBP16.18■□□□□ 0.18
CLN3-225ENST00000566824 NPY4RP50391 375 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 COL10A1Q03692 680 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 PDCD1Q15116 288 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 TMEM185AQ8NFB2 350 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 OR4M2Q8NGB6 313 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 MUL1Q969V5 352 aa16.18■□□□□ 0.18
CLN3-225ENST00000566824 MED30Q96HR3 178 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms