RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 OR51F2Q8NH61 342 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 ZNF671Q8TAW3 534 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 TNFAIP8L1Q8WVP5 186 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 YIPF6Q96EC8 236 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 CEP19Q96LK0 163 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 CNTD2Q9H8S5 307 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 ELL3Q9HB65 397 aaPredicted RBP8.14□□□□□ -1.11
CLK3-208ENST00000562626 TMEM138Q9NPI0 162 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 MMP26Q9NRE1 261 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 FOXJ3Q9UPW0 622 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 MAB21L2Q9Y586 359 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 SVEP1Q4LDE5 3571 aa8.14□□□□□ -1.11
CLK3-208ENST00000562626 TRAV38-1A0A0B4J264 116 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 SMIM30A4D0T7 59 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 RFPL4AA6NLU0 287 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 C22orf46C9J442 243 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 RFPL4AL1F8VTS6 287 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 CD5LO43866 347 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 NXPH2O95156 264 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 ACAA1P09110 424 aaPredicted RBP8.13□□□□□ -1.11
CLK3-208ENST00000562626 TMEM225BP0DP42 221 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 CD37P11049 281 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 FOSL1P15407 271 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 MUC1P15941 1255 aaPredicted RBP8.13□□□□□ -1.11
CLK3-208ENST00000562626 SRMP19623 302 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 CALRP27797 417 aaKnown RBP8.13□□□□□ -1.11
CLK3-208ENST00000562626 ZNF93P35789 620 aaPredicted RBP8.13□□□□□ -1.11
CLK3-208ENST00000562626 OR10A3P58181 314 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 PPP3R1P63098 170 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 PAX2Q02962 417 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 PDCD1Q15116 288 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 HSD17B12Q53GQ0 312 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 C22orf42Q6IC83 251 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 ASCL4Q6XD76 172 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 SPICQ8N5J4 248 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 DACT3Q96B18 629 aaPredicted RBP8.13□□□□□ -1.11
CLK3-208ENST00000562626 GPER1Q99527 375 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 CENPOQ9BU64 300 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 FAM192AQ9GZU8 254 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 NEK6Q9HC98 313 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 TXNL4BQ9NX01 149 aaKnown RBP8.13□□□□□ -1.11
CLK3-208ENST00000562626 OR14J1Q9UGF5 321 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 POLDIP2Q9Y2S7 368 aa8.13□□□□□ -1.11
CLK3-208ENST00000562626 AK6Q9Y3D8 172 aaKnown RBP8.13□□□□□ -1.11
CLK3-208ENST00000562626 A0A0G2JK05 382 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 TMEM82A0PJX8 343 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 A8MXK9 166 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 DVL1O14640 695 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 TMPRSS2O15393 492 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 AVPP01185 164 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 TFAP2AP05549 437 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 CLEC2LP0C7M8 214 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 OCMP0CE72 109 aaPredicted RBP8.12□□□□□ -1.11
CLK3-208ENST00000562626 CD36P16671 472 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 PRKACAP17612 351 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 PSMA1P25786 263 aaKnown RBP8.12□□□□□ -1.11
CLK3-208ENST00000562626 MAPK3P27361 379 aaPredicted RBP8.12□□□□□ -1.11
CLK3-208ENST00000562626 PTGFRP43088 359 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 GABRA2P47869 451 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 PITPNBP48739 271 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 PLA2G7Q13093 441 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 IKZF1Q13422 519 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 TRAM1Q15629 374 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 MICBQ29980 383 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 ATPAF1Q5TC12 328 aaPredicted RBP8.12□□□□□ -1.11
CLK3-208ENST00000562626 WDR25Q64LD2 544 aaPredicted RBP8.12□□□□□ -1.11
CLK3-208ENST00000562626 OR10K2Q6IF99 312 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 FAM166AQ6J272 317 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 CLEC9AQ6UXN8 241 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 RTN4RL2Q86UN3 420 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 FAM58AQ8N1B3 248 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 JAGN1Q8N5M9 183 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 LINC01356Q8N9X3 169 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 ZNRF1Q8ND25 227 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 PXT1Q8NFP0 134 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 PHYHIPQ92561 330 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 EMG1Q92979 244 aaKnown RBP8.12□□□□□ -1.11
CLK3-208ENST00000562626 SLC25A28Q96A46 364 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 RAB39BQ96DA2 213 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 NEIL1Q96FI4 390 aaPredicted RBP8.12□□□□□ -1.11
CLK3-208ENST00000562626 CHCHD6Q9BRQ6 235 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 NAA50Q9GZZ1 169 aaKnown RBP8.12□□□□□ -1.11
CLK3-208ENST00000562626 HMG20AQ9NP66 347 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 RASL12Q9NYN1 266 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 KAAG1Q9UBP8 84 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 CKLFQ9UBR5 152 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 DNAJB11Q9UBS4 358 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 MIOXQ9UGB7 285 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 PCDHB10Q9UN67 800 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 STUB1Q9UNE7 303 aa8.12□□□□□ -1.11
CLK3-208ENST00000562626 NIPBLQ6KC79 2804 aaeCLIP8.12□□□□□ -1.11
CLK3-208ENST00000562626 CUBNO60494 3623 aa8.11□□□□□ -1.11
CLK3-208ENST00000562626 A0A0B4J203 849 aa8.11□□□□□ -1.11
CLK3-208ENST00000562626 ZNF737O75373 536 aa8.11□□□□□ -1.11
CLK3-208ENST00000562626 TGFAP01135 160 aa8.11□□□□□ -1.11
CLK3-208ENST00000562626 HEXAP06865 529 aa8.11□□□□□ -1.11
CLK3-208ENST00000562626 MSMBP08118 114 aa8.11□□□□□ -1.11
CLK3-208ENST00000562626 SERPINA2P20848 420 aa8.11□□□□□ -1.11
CLK3-208ENST00000562626 FGF9P31371 208 aaPredicted RBP8.11□□□□□ -1.11
CLK3-208ENST00000562626 PRDX2P32119 198 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms