RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TBC1D15Q8TC07 691 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 SSMEM1Q8WWF3 244 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 CYGBQ8WWM9 190 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 RFT1Q96AA3 541 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 RDH12Q96NR8 316 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 ZNF649Q9BS31 505 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 METTL8Q9H825 291 aaKnown RBP12.83□□□□□ -0.36
VPS39-203ENST00000561797 INPP5EQ9NRR6 644 aa12.83□□□□□ -0.36
VPS39-203ENST00000561797 CAB39Q9Y376 341 aaPredicted RBP12.83□□□□□ -0.36
VPS39-203ENST00000561797 FBN3Q75N90 2809 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 SPRY1O43609 319 aaPredicted RBP12.82□□□□□ -0.36
VPS39-203ENST00000561797 CYB5AP00167 134 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 CHRM2P08172 466 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 CALCBP10092 127 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 PIPP12273 146 aaPredicted RBP12.82□□□□□ -0.36
VPS39-203ENST00000561797 BCL3P20749 454 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 NPBWR2P48146 333 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 GBX2P52951 348 aaPredicted RBP12.82□□□□□ -0.36
VPS39-203ENST00000561797 RCN1Q15293 331 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 NCR3LG1Q68D85 454 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 TMEM200BQ69YZ2 307 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 UTS2BQ765I0 119 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 MKXQ8IYA7 352 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 TMEM86BQ8N661 226 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 OR13C9Q8NGT0 318 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 CNIH3Q8TBE1 160 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 EMG1Q92979 244 aaKnown RBP12.82□□□□□ -0.36
VPS39-203ENST00000561797 OPALINQ96PE5 141 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 SPACA5Q96QH8 159 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 UNKLQ9H9P5 680 aaKnown RBP12.82□□□□□ -0.36
VPS39-203ENST00000561797 MRPS18AQ9NVS2 196 aaKnown RBP12.82□□□□□ -0.36
VPS39-203ENST00000561797 POMT1Q9Y6A1 747 aa12.82□□□□□ -0.36
VPS39-203ENST00000561797 MEIOCA2RUB1 952 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 ANKRD65E5RJM6 399 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 ANGPTL7O43827 346 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 FBP1P09467 338 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 CCL3L1P16619 93 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 MDKP21741 143 aaPredicted RBP12.81□□□□□ -0.36
VPS39-203ENST00000561797 PEX2P28328 305 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 SAA4P35542 130 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 IER3P46695 156 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 UBE2E1P51965 193 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 SNU13P55769 128 aaKnown RBP12.81□□□□□ -0.36
VPS39-203ENST00000561797 ERVFRD-1P60508 538 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 KIAA2026Q5HYC2 2103 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 ZNF691Q5VV52 312 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 LHFPL2Q6ZUX7 228 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 RNF144BQ7Z419 303 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 LDLRAD3Q86YD5 345 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 OR5D13Q8NGL4 314 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 OR5AK2Q8NH90 309 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 PDCD1LG2Q9BQ51 273 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 ZNF747Q9BV97 191 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 COMMD4Q9H0A8 199 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 FAM234AQ9H0X4 552 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 FGF20Q9NP95 211 aaPredicted RBP12.81□□□□□ -0.36
VPS39-203ENST00000561797 RBFOX1Q9NWB1 397 aaKnown RBP12.81□□□□□ -0.36
VPS39-203ENST00000561797 IL36RNQ9UBH0 155 aa12.81□□□□□ -0.36
VPS39-203ENST00000561797 TRBV2A0A0J9YWF9 115 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 A0A1W2PPH5 198 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 MEX3AA1L020 520 aaKnown RBP12.8□□□□□ -0.36
VPS39-203ENST00000561797 K7N7A8 449 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 ZFPL1O95159 310 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 PAHP00439 452 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 LIMS3P0CW19 117 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 LIMS4P0CW20 117 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 PRKACAP17612 351 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 DUSP1P28562 367 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 ETV1P50549 477 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 GTF2A1P52655 376 aaPredicted RBP12.8□□□□□ -0.36
VPS39-203ENST00000561797 EDDM3BP56851 147 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 PDZK1IP1Q13113 114 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 ZNF273Q14593 569 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 TTC23Q5W5X9 447 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 HCP5Q6MZN7 132 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 Q8IYB0 196 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 FAM58AQ8N1B3 248 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 DHRSXQ8N5I4 330 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 OR5D18Q8NGL1 313 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 TSEN15Q8WW01 171 aaKnown RBP12.8□□□□□ -0.36
VPS39-203ENST00000561797 SPSB1Q96BD6 273 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 DPAGT1Q9H3H5 408 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 ZCCHC4Q9H5U6 513 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 NEK6Q9HC98 313 aa12.8□□□□□ -0.36
VPS39-203ENST00000561797 SF3B6Q9Y3B4 125 aaKnown RBP12.8□□□□□ -0.36
VPS39-203ENST00000561797 TMEM212A6NML5 194 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 GPR137BO60478 399 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 ZNF737O75373 536 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 HAND1O96004 215 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 CCDC159P0C7I6 412 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 RAG2P55895 527 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 MRPL28Q13084 256 aaKnown RBP12.79□□□□□ -0.36
VPS39-203ENST00000561797 GDPD3Q7L5L3 318 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 C11orf42Q8N5U0 333 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 PACRGLQ8N7B6 248 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 SNX22Q96L94 193 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 C1RLQ9NZP8 487 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 ZNRD1Q9P1U0 126 aa12.79□□□□□ -0.36
VPS39-203ENST00000561797 hCG_1809904A0A1W2PP81 198 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 A0A1W2PPE2 198 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms