RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 LYRM4Q9HD34 91 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 C14orf166Q9Y224 244 aaKnown RBP9.56□□□□□ -0.88
USP3-206ENST00000558157 KIR2DL5BA0A0G2JN68 375 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 KIR2DL5BA0A0G2JPC4 375 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 CD59P13987 128 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 RND3P61587 244 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 GXYLT1Q4G148 440 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 C1orf194Q5T5A4 169 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 AADACL3Q5VUY0 350 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 LRRC69Q6ZNQ3 347 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 KIR2DL5AQ8N109 375 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 JSRP1Q96MG2 331 aaPredicted RBP9.56□□□□□ -0.88
USP3-206ENST00000558157 CNTD2Q9H8S5 307 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 LRFN1Q9P244 771 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 SLC5A6Q9Y289 635 aa9.56□□□□□ -0.88
USP3-206ENST00000558157 COL27A1Q8IZC6 1860 aaPredicted RBP9.56□□□□□ -0.88
USP3-206ENST00000558157 A6NIZ1 184 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 ZNF705GA8MUZ8 300 aaPredicted RBP9.55□□□□□ -0.88
USP3-206ENST00000558157 TMEM14DPA8MWL7 114 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 H0YL77 283 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 NTN3O00634 580 aaPredicted RBP9.55□□□□□ -0.88
USP3-206ENST00000558157 CYB5R3P00387 301 aaPredicted RBP9.55□□□□□ -0.88
USP3-206ENST00000558157 ASAH2BP0C7U1 165 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 EDN3P14138 238 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 ACP1P24666 158 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 RAP1BP61224 184 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 PAX5Q02548 391 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 IL13RA2Q14627 380 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 ZAR1Q86SH2 424 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 THNSL2Q86YJ6 484 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 TMEM52Q8NDY8 209 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 NOXO1Q8NFA2 376 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 ZNF501Q96CX3 271 aaPredicted RBP9.55□□□□□ -0.88
USP3-206ENST00000558157 NKX3-1Q99801 234 aaPredicted RBP9.55□□□□□ -0.88
USP3-206ENST00000558157 SPOCK3Q9BQ16 436 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 G6PC3Q9BUM1 346 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 SRD5A3Q9H8P0 318 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 TMEM9BQ9NQ34 198 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 WSB1Q9Y6I7 421 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 R4GMQ9 66 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 SCN2AQ99250 2005 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 IGKV1D-42A0A075B6H8 117 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 NSA2O95478 260 aaKnown RBP9.55□□□□□ -0.88
USP3-206ENST00000558157 PGA4P0DJD7 388 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 PGA5P0DJD9 388 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 ATXN8OSP0DMR3 200 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 VSIG8P0DPA2 414 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 APLNRP35414 380 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 OR3A1P47881 315 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 RAB38P57729 211 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 FAM53BQ14153 422 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 TAF9Q16594 264 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 PRICKLE4Q2TBC4 344 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 OR10A7Q8NGE5 316 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 OR13G1Q8NGZ3 307 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 TMEM18Q96B42 140 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 CTHRC1Q96CG8 243 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 ARSGQ96EG1 525 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 TSPAN32Q96QS1 320 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 SYT3Q9BQG1 590 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 MMP25Q9NPA2 562 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 PARD6AQ9NPB6 346 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 FGF21Q9NSA1 209 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 SPACA6W5XKT8 324 aa9.55□□□□□ -0.88
USP3-206ENST00000558157 ASCC3Q8N3C0 2202 aaKnown RBP9.54□□□□□ -0.88
USP3-206ENST00000558157 LOC107986453A0A1B0GWG9 222 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 FAM230AA0A1W2PPH8 454 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 A8MVM7 634 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 CYR61O00622 381 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 CDC14BO60729 498 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 SCAF4O95104 1147 aaKnown RBP9.54□□□□□ -0.88
USP3-206ENST00000558157 HBE1P02100 147 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 HIST1H1DP16402 221 aaKnown RBP9.54□□□□□ -0.88
USP3-206ENST00000558157 OR3A2P47893 321 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 NOVA1P51513 510 aaKnown RBP9.54□□□□□ -0.88
USP3-206ENST00000558157 ZNF266Q14584 549 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 PCK2Q16822 640 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 SP5Q6BEB4 398 aaPredicted RBP9.54□□□□□ -0.88
USP3-206ENST00000558157 SPSB3Q6PJ21 355 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 BTNL3Q6UXE8 466 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 OR4N5Q8IXE1 308 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 C8orf44Q96CB5 159 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 MMABQ96EY8 250 aaPredicted RBP9.54□□□□□ -0.88
USP3-206ENST00000558157 WFDC1Q9HC57 220 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 LSM5Q9Y4Y9 91 aaKnown RBP9.54□□□□□ -0.88
USP3-206ENST00000558157 C4orf47A7E2U8 309 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 SRSF10O75494 262 aaKnown RBP9.54□□□□□ -0.88
USP3-206ENST00000558157 C1QL1O75973 258 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 CST2P09228 141 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 NPSP0C0P6 89 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 GNG10P50151 68 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 EMP2P54851 167 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 ID2Q02363 134 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 ICAM4Q14773 271 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 HERPUD1Q15011 391 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 DPPA3Q6W0C5 159 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 TGIF2LYQ8IUE0 185 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 LPAR4Q99677 370 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 PRR13Q9NZ81 148 aa9.54□□□□□ -0.88
USP3-206ENST00000558157 A0A1B0GU03 582 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms