RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TPT1P13693 172 aaKnown RBP10.96□□□□□ -0.65
SHMT2-229ENST00000557348 CPT2P23786 658 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 RPL35P42766 123 aaKnown RBP10.96□□□□□ -0.65
SHMT2-229ENST00000557348 OR3A4PP47883 348 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 FUT6P51993 359 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 SORDQ00796 357 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 GUSBP1Q15486 140 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 UBE2V2Q15819 145 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 STEAP1BQ6NZ63 245 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 ZNF584Q8IVC4 421 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 PUSL1Q8N0Z8 303 aaKnown RBP10.96□□□□□ -0.65
SHMT2-229ENST00000557348 GABRG1Q8N1C3 465 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 INO80EQ8NBZ0 244 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-229ENST00000557348 ACBD4Q8NC06 268 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 C1orf162Q8NEQ5 155 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-229ENST00000557348 SLC30A7Q8NEW0 376 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 OR5L1Q8NGL2 311 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 THAP6Q8TBB0 222 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 GCDHQ92947 438 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-229ENST00000557348 BORCS8Q96FH0 119 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 C1orf147Q96MC9 270 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-229ENST00000557348 TRIB1Q96RU8 372 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 KCNK15Q9H427 330 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 TUBA4BQ9H853 241 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 SSUH2Q9Y2M2 353 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 A0A096LPE4 126 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 TRBV6-7A0A0A0MS04 114 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 TRAV14DV4A0A0A6YYC5 116 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 A0A1W2PPZ6 126 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 CRTAPO75718 401 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 MPIG6BO95866 241 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 OR4E1P0C645 316 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 PATE4P0C8F1 98 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 HOXC12P31275 282 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 ATP1B3P54709 279 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 MTCP1P56278 107 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 UBE2MP61081 183 aaKnown RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 SSTP61278 116 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 FAM3AP98173 230 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 HGFACQ04756 655 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 C4orf46Q504U0 113 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 ACTBL2Q562R1 376 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 MTFR2Q6P444 385 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 Q6ZT83 130 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 BIVMQ86UB2 503 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 LDLRAD3Q86YD5 345 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 ZDHHC22Q8N966 263 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 CHST4Q8NCG5 386 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 CPEB3Q8NE35 698 aaKnown RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 FGFBP3Q8TAT2 258 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 BCL2L2Q92843 193 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 RAB3CQ96E17 227 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 TM2D1Q9BX74 207 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 METTL9Q9H1A3 318 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 LPAR5Q9H1C0 372 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 OR51M1Q9H341 326 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 SPEGQ15772 3267 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 DCHS1Q96JQ0 3298 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 PHF3Q92576 2039 aaKnown RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 C5orf49A4QMS7 147 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 C5orf63A6NC05 138 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 SERPINE3A8MV23 424 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 ZNF736B4DX44 427 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 UBE2CO00762 179 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 IL18BPO95998 194 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 HLA-HP01893 362 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 CD74P04233 296 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 FCER2P06734 321 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 HIST1H1DP16402 221 aaKnown RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 UBE2NP61088 152 aaKnown RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 ZNF92Q03936 586 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 KRTCAP3Q53RY4 240 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 C9orf135Q5VTT2 229 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 NSUN5P2Q63ZY6 315 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 OR10K2Q6IF99 312 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 MRPL21Q7Z2W9 205 aaKnown RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 FAM89BQ8N5H3 189 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 OR2AE1Q8NHA4 323 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 WDR89Q96FK6 387 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 POM121L2Q96KW2 1035 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 PRRT1Q99946 306 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 ESRP2Q9H6T0 727 aaKnown RBP10.95□□□□□ -0.66
SHMT2-229ENST00000557348 C12orf49Q9H741 205 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 SMCO4Q9NRQ5 59 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 IL36GQ9NZH8 169 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 PRSS50Q9UI38 385 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 PCDHB10Q9UN67 800 aa10.95□□□□□ -0.66
SHMT2-229ENST00000557348 NCOA6Q14686 2063 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-229ENST00000557348 TMEM235A6NFC5 223 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 WDR1O75083 606 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 SIX6O95475 246 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 RAB3DO95716 219 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 CSTBP04080 98 aaKnown RBP10.94□□□□□ -0.66
SHMT2-229ENST00000557348 ACKR3P25106 362 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 TBC1D28Q2M2D7 210 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 ACSF3Q4G176 576 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-229ENST00000557348 SLC22A6Q4U2R8 563 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 LY6G6FQ5SQ64 297 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 INO80CQ6PI98 192 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-229ENST00000557348 UNQ6126/PRO20091Q6UXV3 157 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms