RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ACAA1P09110 424 aaPredicted RBP11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 SERPINB10P48595 397 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 CEBPDP49716 269 aaPredicted RBP11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 TMEM155Q4W5P6 130 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 LYPD2Q6UXB3 125 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 TPRA1Q86W33 373 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 LYPD6Q86Y78 171 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 CIARTQ8N365 385 aaPredicted RBP11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 A0A1W2PP11 408 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 CCDC160A6NGH7 325 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 NKX6-3A6NJ46 265 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 RFPL4AA6NLU0 287 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 RFPL4AL1F8VTS6 287 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 TMPRSS2O15393 492 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 CRTAPO75718 401 aaPredicted RBP11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 HEXAP06865 529 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 PSG2P11465 335 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 IL2RGP31785 369 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 C1orf100Q5SVJ3 147 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 STUMQ69YW2 141 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 DCDC5Q6ZRR9 648 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 NR2C2APQ86WQ0 139 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 FAM46BQ96A09 425 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 C12orf43Q96C57 262 aaKnown RBP11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 KCNK15Q9H427 330 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 ZNF665Q9H7R5 613 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 HES4Q9HCC6 221 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 HMG20AQ9NP66 347 aa11.74□□□□□ -0.53
VIPAS39-208ENST00000556412 IFITM5A6NNB3 132 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 SLC17A2O00624 439 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 SLC22A1O15245 554 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 KNG1P01042 644 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 SLC2A2P11168 524 aaPredicted RBP11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 SCN1BQ07699 218 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 IKZF1Q13422 519 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 PDCD1Q15116 288 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 CTF1Q16619 201 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 NLRC3Q7RTR2 1065 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 FAM216BQ8N7L0 139 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 TBC1D15Q8TC07 691 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 BANF2Q9H503 90 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 DAPK2Q9UIK4 370 aa11.73□□□□□ -0.53
VIPAS39-208ENST00000556412 IGKV1D-17A0A075B6S4 117 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 A0A1B0GW55 424 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 NOTOA8MTQ0 251 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 ZNF780AO75290 641 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 IGHV2-5P01817 119 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 DUX4L2P0CJ85 424 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 DUX4L3P0CJ86 424 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 DUX4L4P0CJ87 422 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 DUX4L5P0CJ88 424 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 DUX4L6P0CJ89 424 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 DUX4L7P0CJ90 424 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 GTF2F2P13984 249 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 ARSBP15848 533 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 PRDX2P32119 198 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 FGF12P61328 243 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 LOXL1Q08397 574 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 GPR176Q14439 515 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 DGUOKQ16854 277 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 PIGYQ3MUY2 71 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 OR10K2Q6IF99 312 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 DUX4L9Q6RFH8 374 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 ASCL4Q6XD76 172 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 OSR2Q8N2R0 312 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 OR51D1Q8NGF3 324 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 OR8B3Q8NGG8 313 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 ANGPTL6Q8NI99 470 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 RAB39BQ96DA2 213 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 OR8B2Q96RD0 313 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 PATZ1Q9HBE1 687 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 LPAR2Q9HBW0 351 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 PCDHB16Q9NRJ7 776 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 DUX4Q9UBX2 424 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 MIOXQ9UGB7 285 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 STEAP1Q9UHE8 339 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 GLS2Q9UI32 602 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 CCDC168Q8NDH2 2452 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 A0A096LNT2 108 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 A0A0B4J203 849 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 AIPO00170 330 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 NDUFA2O43678 99 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 FSTL3O95633 263 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 HAND1O96004 215 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 UBBP0CG47 229 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 SELLP14151 372 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 RPS19P39019 145 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 BMXP51813 675 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 CAPZA1P52907 286 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 SEC61A1P61619 476 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 SFXN4Q6P4A7 337 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 METAP1DQ6UB28 335 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 SLC36A1Q7Z2H8 476 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 CD177Q8N6Q3 437 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 ASCC1Q8N9N2 400 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 TMEM104Q8NE00 496 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 NDNFQ8TB73 568 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 RAB2BQ8WUD1 216 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 NEIL1Q96FI4 390 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 CST11Q9H112 138 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms