RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SSR4P51571 173 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 F2RL1P55085 397 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 EIF5AP63241 154 aaKnown RBP13.72□□□□□ -0.21
LDLR-204ENST00000545707 PEA15Q15121 130 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 ABCA11PQ4W5N1 156 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 OR52M1Q8NGK5 317 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 JTBO76095 146 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 TMEM187Q14656 261 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 ARL6IP1Q15041 203 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 SWI5Q1ZZU3 235 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 GLYATL2Q8WU03 294 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 BORCS8Q96FH0 119 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 NECAP2Q9NVZ3 263 aa13.72□□□□□ -0.21
LDLR-204ENST00000545707 FAM157AC9JC47 383 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 CHATP28329 748 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 RBP2P50120 134 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 MRPS34P82930 218 aaKnown RBP13.71□□□□□ -0.21
LDLR-204ENST00000545707 ZNF616Q08AN1 781 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 LYSMD4Q5XG99 296 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 Q6ZPA2 131 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 Q6ZSR3 168 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 RPS19BP1Q86WX3 136 aaKnown RBP13.71□□□□□ -0.21
LDLR-204ENST00000545707 OR1F12Q8NHA8 337 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 CLCC1Q96S66 551 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 SH3BGRL3Q9H299 93 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 NAA60Q9H7X0 242 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 PARP11Q9NR21 331 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 KCNIP3Q9Y2W7 256 aa13.71□□□□□ -0.21
LDLR-204ENST00000545707 LOC102723996A0A087X1L8 192 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 CA11O75493 328 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 F10P00742 488 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 HTR5AP47898 357 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 NHLH2Q02577 135 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 EIF3IQ13347 325 aaKnown RBP13.71□□□□□ -0.22
LDLR-204ENST00000545707 TGIF1Q15583 401 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 MIDNQ504T8 468 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 AVPI1Q5T686 147 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 IFI44Q8TCB0 444 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 C12orf57Q99622 126 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 DECR2Q9NUI1 292 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 ZDHHC8Q9ULC8 765 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 ST3GAL6Q9Y274 331 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 RFNGQ9Y644 331 aa13.71□□□□□ -0.22
LDLR-204ENST00000545707 COLCA2A8K830 154 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 NRASP01111 189 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 IGHV3-9P01782 118 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 RAC1P63000 192 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 ZNF92Q03936 586 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 PPA1Q15181 289 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 RTL6Q6ICC9 239 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 C20orf24Q9BUV8 137 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 SLC2A9Q9NRM0 540 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 APOC1P02654 83 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 KLK3P07288 261 aaPredicted RBP13.7□□□□□ -0.22
LDLR-204ENST00000545707 RFPL3SP0C7P2 107 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 DAOP14920 347 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 HOXA1P49639 335 aaPredicted RBP13.7□□□□□ -0.22
LDLR-204ENST00000545707 DVL1P1P54792 670 aaPredicted RBP13.7□□□□□ -0.22
LDLR-204ENST00000545707 PSG4Q00888 419 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 RAB35Q15286 201 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 PIGCQ92535 297 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 SPSB1Q96BD6 273 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 GPHA2Q96T91 129 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 P4HTMQ9NXG6 502 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 CACFD1Q9UGQ2 172 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 EDARQ9UNE0 448 aa13.7□□□□□ -0.22
LDLR-204ENST00000545707 CXCL13O43927 109 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 TSPAN15O95858 294 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 GAPDHP04406 335 aaKnown RBP13.69□□□□□ -0.22
LDLR-204ENST00000545707 ECI1P42126 302 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 RGS19P49795 217 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 MEX3BQ6ZN04 569 aaKnown RBP13.69□□□□□ -0.22
LDLR-204ENST00000545707 HSD17B11Q8NBQ5 300 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 C10orf35Q96D05 121 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 C14orf79Q96F83 325 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 RPS10P5Q9NQ39 176 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 ZNF587BE7ETH6 402 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 FGF5P12034 268 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 SUCLG1P53597 346 aaKnown RBP13.69□□□□□ -0.22
LDLR-204ENST00000545707 RPS18P62269 152 aaKnown RBP13.69□□□□□ -0.22
LDLR-204ENST00000545707 OSR2Q8N2R0 312 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 UBAC2Q8NBM4 344 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 OR14L1PQ8NHC6 308 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 ZNF700Q9H0M5 742 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 WDR54Q9H977 334 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 BIN3Q9NQY0 253 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 TMEM38BQ9NVV0 291 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 WNT16Q9UBV4 365 aa13.69□□□□□ -0.22
LDLR-204ENST00000545707 NSG1A0A0A6YYJ2 146 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 E5RGE8 158 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 PHF1O43189 567 aaPredicted RBP13.68□□□□□ -0.22
LDLR-204ENST00000545707 CBR3O75828 277 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 CFIP05156 583 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 NPBWR2P48146 333 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 CARD18P57730 90 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 FAM3AP98173 230 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 CNN3Q15417 329 aaKnown RBP13.68□□□□□ -0.22
LDLR-204ENST00000545707 CEACAM16Q2WEN9 425 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 IGSF11Q5DX21 431 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 SLC23A3Q6PIS1 610 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms