RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TRIP11Q15643 1979 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 TICRRQ7Z2Z1 1910 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 GMNCA6NCL1 334 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 K7EM74 188 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 M0R1B8 84 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 DHRS3O75911 302 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 KCNK2O95069 426 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 RLN2P04090 185 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 SEC11BP0C7V7 166 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 PRPS1L1P21108 318 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 PRTN3P24158 256 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 PSMB9P28065 219 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 DNASE1L1P49184 302 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 TNNC1P63316 161 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 FBXL19-AS1Q494R0 122 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 KRTAP13-2Q52LG2 175 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 PYDC2Q56P42 97 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 LIN9Q5TKA1 542 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 MORN3Q6PF18 240 aaPredicted RBP1.45□□□□□ -2.18
CD44-238ENST00000534296 PID1Q7Z2X4 250 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 NT5DC3Q86UY8 548 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 CYP4Z2PQ8N1L4 340 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 ATPAF2Q8N5M1 289 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 OR4D6Q8NGJ1 314 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 UBA3Q8TBC4 463 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 CASTOR1Q8WTX7 329 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 LRRC39Q96DD0 335 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 MSANTD3Q96H12 275 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 FAM19A4Q96LR4 140 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 PEBP4Q96S96 227 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 SIKE1Q9BRV8 207 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 THTPAQ9BU02 230 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 PLA2G12AQ9BZM1 189 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 CHRNA10Q9GZZ6 450 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 SYT4Q9H2B2 425 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 RHOFQ9HBH0 211 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 C12orf4Q9NQ89 552 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 ANXA10Q9UJ72 324 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 MCTS1Q9ULC4 181 aaKnown RBP1.45□□□□□ -2.18
CD44-238ENST00000534296 SLC22A14Q9Y267 594 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 ADAMTSL3P82987 1691 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 SCN4AP35499 1836 aa1.45□□□□□ -2.18
CD44-238ENST00000534296 VWA8A3KMH1 1905 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 ELP1O95163 1332 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 CCL15-CCL14A0A0B4J2E2 113 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 IZUMO1RA6ND01 250 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 TVP23AA6NH52 213 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 KDELR3O43731 214 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 SYNGR2O43760 224 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 GMDSO60547 372 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 PSIP1O75475 530 aaKnown RBP1.44□□□□□ -2.18
CD44-238ENST00000534296 KLHL2O95198 593 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 IGLV2-8P01709 118 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 APOA1P02647 267 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 TAC1P20366 129 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 PAX6P26367 422 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 ELK4P28324 431 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 CBX5P45973 191 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 TSPAN5P62079 268 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 FMODQ06828 376 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 IHHQ14623 411 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 CCL15Q16663 113 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 DEFB134Q4QY38 66 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 ZNF678Q5SXM1 525 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 FAM104BQ5XKR9 115 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 KCTD16Q68DU8 428 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 KDM4DQ6B0I6 523 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 TBPL2Q6SJ96 375 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 LINC00596Q86U02 117 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 ZCCHC24Q8N2G6 241 aaKnown RBP1.44□□□□□ -2.18
CD44-238ENST00000534296 LINC00304Q8N9R0 145 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 DRAXINQ8NBI3 349 aaPredicted RBP1.44□□□□□ -2.18
CD44-238ENST00000534296 OR2M7Q8NG81 312 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 FAM57AQ8TBR7 257 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 C2orf15Q8WU43 125 aaKnown RBP1.44□□□□□ -2.18
CD44-238ENST00000534296 ADTRPQ96IZ2 230 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 C18orf15Q96N68 181 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 BCL2L14Q9BZR8 327 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 GOLPH3Q9H4A6 298 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 HAUS4Q9H6D7 363 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 CHMP5Q9NZZ3 219 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 NAGKQ9UJ70 344 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 TFR2Q9UP52 801 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 C14orf166Q9Y224 244 aaKnown RBP1.44□□□□□ -2.18
CD44-238ENST00000534296 ZNF608Q9ULD9 1512 aaPredicted RBP1.44□□□□□ -2.18
CD44-238ENST00000534296 MIA3Q5JRA6 1907 aa1.44□□□□□ -2.18
CD44-238ENST00000534296 GPR179Q6PRD1 2367 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 LOC389332A0A1B0GUA5 103 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 SLC5A10A0PJK1 596 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 PSMD11O00231 422 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 UBDO15205 165 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 OR5AC1P0C628 307 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 LIPCP11150 499 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 PTHLHP12272 177 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 BGNP21810 368 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 IMPA1P29218 277 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 CRABP2P29373 138 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 RPA3P35244 121 aaPredicted RBP1.43□□□□□ -2.18
CD44-238ENST00000534296 ZNF83P51522 516 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 SSX1Q16384 188 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms