RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SP6Q3SY56 376 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 ZNF774Q6NX45 483 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 ETV3LQ6ZN32 361 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 Q6ZRG5 221 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 DYRK2Q92630 601 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 ERGIC1Q969X5 290 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 MARS2Q96GW9 593 aaKnown RBP16.74■□□□□ 0.27
VPS28-213ENST00000530983 ZNF251Q9BRH9 671 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 PTRH2Q9Y3E5 179 aaKnown RBP16.74■□□□□ 0.27
VPS28-213ENST00000530983 HS3ST3B1Q9Y662 390 aa16.74■□□□□ 0.27
VPS28-213ENST00000530983 TMEM265A0A087WTH1 108 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 ZNF850A8MQ14 1090 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 KLF7O75840 302 aaPredicted RBP16.73■□□□□ 0.27
VPS28-213ENST00000530983 SCGB1D2O95969 90 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 DTYMKP23919 212 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 CD80P33681 288 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 SSR4P51571 173 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 EXT1Q16394 746 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 GPR137CQ8N3F9 429 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 TERTO14746 1132 aaKnown RBP16.73■□□□□ 0.27
VPS28-213ENST00000530983 MBPP02686 304 aaPredicted RBP16.73■□□□□ 0.27
VPS28-213ENST00000530983 OR8U9P0C7N5 309 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 PTAFRP25105 342 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 TMEM187Q14656 261 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 LYSMD4Q5XG99 296 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 OR8U1Q8NH10 309 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 LYPD6BQ8NI32 183 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 NAA60Q9H7X0 242 aa16.73■□□□□ 0.27
VPS28-213ENST00000530983 S100A8P05109 93 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 OR5AC1P0C628 307 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 ZNF728P0DKX0 622 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 FAM3AP98173 230 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 CNN3Q15417 329 aaKnown RBP16.72■□□□□ 0.27
VPS28-213ENST00000530983 BRICD5Q6PL45 260 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 CLEC9AQ6UXN8 241 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 ASCL4Q6XD76 172 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 UBAC2Q8NBM4 344 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 RTN4IP1Q8WWV3 396 aaPredicted RBP16.72■□□□□ 0.27
VPS28-213ENST00000530983 GALNT14Q96FL9 552 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 BSCL2Q96G97 398 aaPredicted RBP16.72■□□□□ 0.27
VPS28-213ENST00000530983 EGLN1Q9GZT9 426 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 CRLF2Q9HC73 371 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 NIT2Q9NQR4 276 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 DMDP11532 3685 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 NCKAP5O14513 1909 aa16.72■□□□□ 0.27
VPS28-213ENST00000530983 CCDC187A0A096LP49 1063 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 IGKV1-12A0A0C4DH73 117 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 MASP2O00187 686 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 UBE2CO00762 179 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 GEMIN2O14893 280 aaKnown RBP16.71■□□□□ 0.27
VPS28-213ENST00000530983 IGKV1D-12P01611 117 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 ZNF44P15621 663 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 RBP2P50120 134 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 IL11RAQ14626 422 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 PIGYQ3MUY2 71 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 TSPO2Q5TGU0 170 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 ZNF468Q5VIY5 522 aaPredicted RBP16.71■□□□□ 0.27
VPS28-213ENST00000530983 TMEM156Q8N614 296 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 OR10AD1Q8NGE0 317 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 OR1F12Q8NHA8 337 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 C14orf79Q96F83 325 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 CLCC1Q96S66 551 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 PLEKHA2Q9HB19 425 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 SMCO4Q9NRQ5 59 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 KCNIP3Q9Y2W7 256 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 LCATP04180 440 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 S100A9P06702 114 aaKnown RBP16.71■□□□□ 0.27
VPS28-213ENST00000530983 PATE4P0C8F1 98 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 DVL1P1P54792 670 aaPredicted RBP16.71■□□□□ 0.27
VPS28-213ENST00000530983 HLA-BQ31612 363 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 M1APQ8TC57 530 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 MR1Q95460 341 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 TCEAL3Q969E4 200 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 BORCS8Q96FH0 119 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 KIRREL1Q96J84 757 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 SF3B5Q9BWJ5 86 aaKnown RBP16.71■□□□□ 0.27
VPS28-213ENST00000530983 POMT1Q9Y6A1 747 aa16.71■□□□□ 0.27
VPS28-213ENST00000530983 FAM221AA4D161 298 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 CBR3O75828 277 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 CST2P09228 141 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 PPT1P50897 306 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 FXYD4P59646 89 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 EIF2S3LQ2VIR3 472 aaKnown RBP16.7■□□□□ 0.26
VPS28-213ENST00000530983 AKIRIN2Q53H80 203 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 TMEM42Q69YG0 159 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 LYZL2Q7Z4W2 148 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 NAXEQ8NCW5 288 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 AKR7LQ8NHP1 331 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 NAT6Q93015 286 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 HLA-CQ95604 372 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 PARP12Q9H0J9 701 aaKnown RBP16.7■□□□□ 0.26
VPS28-213ENST00000530983 ARV1Q9H2C2 271 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 TMEM38BQ9NVV0 291 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 TINAGQ9UJW2 476 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 SHANK1Q9Y566 2161 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 A0A1W2PPE3 182 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 OR6C6A6NF89 314 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 C1orf196B1AJZ1 125 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 E5RGE8 158 aa16.7■□□□□ 0.26
VPS28-213ENST00000530983 B4GALT1P15291 398 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms