RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 C19orf12Q9NSK7 152 aa12.38□□□□□ -0.43
USP39-217ENST00000491659 ERVK13-1Q9NX77 482 aa12.38□□□□□ -0.43
USP39-217ENST00000491659 MTCH1Q9NZJ7 389 aa12.38□□□□□ -0.43
USP39-217ENST00000491659 OR4C45A6NMZ5 311 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 INMTO95050 263 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 PAHP00439 452 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 TK1P04183 234 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 CCDC159P0C7I6 412 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 DLX1P56177 255 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 MTCP1P56278 107 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 COL10A1Q03692 680 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 LPCAT4Q643R3 524 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 HAVCR2Q8TDQ0 301 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 OPALINQ96PE5 141 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 CHIAQ9BZP6 476 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 DPAGT1Q9H3H5 408 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 ISG20L2Q9H9L3 353 aaKnown RBP12.37□□□□□ -0.43
USP39-217ENST00000491659 UNKLQ9H9P5 680 aaKnown RBP12.37□□□□□ -0.43
USP39-217ENST00000491659 NEK6Q9HC98 313 aa12.37□□□□□ -0.43
USP39-217ENST00000491659 MRPS18AQ9NVS2 196 aaKnown RBP12.37□□□□□ -0.43
USP39-217ENST00000491659 IGKV1-9A0A0C4DH69 117 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 hCG_1809904A0A1W2PP81 198 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 A0A1W2PPE2 198 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 A0A1W2PR64 198 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 A0A1W2PRD5 423 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 A0A1W2PRF3 423 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 A0A1W2PRM7 423 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 A0A1W2PRV1 198 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 MEIOCA2RUB1 952 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 BTBD17A6NE02 478 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 FAM181BA6NEQ2 426 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 TMEM212A6NML5 194 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 CHRM2P08172 466 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 UBE2E1P51965 193 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 GBX2P52951 348 aaPredicted RBP12.36□□□□□ -0.43
USP39-217ENST00000491659 RCN1Q15293 331 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 LRRC36Q1X8D7 754 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 ZNF691Q5VV52 312 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 PACRGLQ8N7B6 248 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 SETD9Q8NE22 299 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 OR51A4Q8NGJ6 313 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 OR13C9Q8NGT0 318 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 OR10AC1Q8NH08 325 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 TSEN15Q8WW01 171 aaKnown RBP12.36□□□□□ -0.43
USP39-217ENST00000491659 CYGBQ8WWM9 190 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 TNFRSF14Q92956 283 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 ZNF747Q9BV97 191 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 ZNRD1Q9P1U0 126 aa12.36□□□□□ -0.43
USP39-217ENST00000491659 SF3B6Q9Y3B4 125 aaKnown RBP12.36□□□□□ -0.43
USP39-217ENST00000491659 TRBV2A0A0J9YWF9 115 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 IRGMA1A4Y4 181 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 F8VVB4 439 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 F8VWA3 439 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 K7N7A8 449 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 ANGPTL7O43827 346 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 IGHV4-59P01825 116 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 PEX2P28328 305 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 SAA4P35542 130 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 IER3P46695 156 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 RPL15P61313 204 aaKnown RBP12.35□□□□□ -0.43
USP39-217ENST00000491659 ACSM1Q08AH1 577 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 RIPK1Q13546 671 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 TTC23Q5W5X9 447 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 GDPD3Q7L5L3 318 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 OR4M1Q8NGD0 313 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 OR4F5Q8NH21 305 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 OR5AK2Q8NH90 309 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 DYRK2Q92630 601 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 JAM3Q9BX67 310 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 FGF20Q9NP95 211 aaPredicted RBP12.35□□□□□ -0.43
USP39-217ENST00000491659 GLS2Q9UI32 602 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 DHDHQ9UQ10 334 aa12.35□□□□□ -0.43
USP39-217ENST00000491659 SPRY1O43609 319 aaPredicted RBP12.34□□□□□ -0.43
USP39-217ENST00000491659 ZNF737O75373 536 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 WBP4O75554 376 aaKnown RBP12.34□□□□□ -0.43
USP39-217ENST00000491659 ZFPL1O95159 310 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 CLIC3O95833 236 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 HAND1O96004 215 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 PIPP12273 146 aaPredicted RBP12.34□□□□□ -0.43
USP39-217ENST00000491659 BCL3P20749 454 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 MDKP21741 143 aaPredicted RBP12.34□□□□□ -0.43
USP39-217ENST00000491659 OMGP23515 440 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 RAG2P55895 527 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 EDDM3BP56851 147 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 ERVFRD-1P60508 538 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 SMN1Q16637 294 aaKnown RBP12.34□□□□□ -0.43
USP39-217ENST00000491659 TMEM200BQ69YZ2 307 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 SHISA2Q6UWI4 295 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 FAM58AQ8N1B3 248 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 PNKDQ8N490 385 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 CNIH3Q8TBE1 160 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 TAF15Q92804 592 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP39-217ENST00000491659 RFT1Q96AA3 541 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 PDCD1LG2Q9BQ51 273 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 ZNF649Q9BS31 505 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 ZCCHC4Q9H5U6 513 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 HEXA-AS1Q9H8Q6 139 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 RBFOX1Q9NWB1 397 aaKnown RBP12.34□□□□□ -0.43
USP39-217ENST00000491659 DSCAML1Q8TD84 2053 aa12.34□□□□□ -0.43
USP39-217ENST00000491659 A0A1B0GUS0 222 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms