RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 LFNGQ8NES3 379 aa10.63□□□□□ -0.71
COL3A1-206ENST00000487010 SLC22A8Q8TCC7 542 aa10.63□□□□□ -0.71
COL3A1-206ENST00000487010 TMEM54Q969K7 222 aa10.63□□□□□ -0.71
COL3A1-206ENST00000487010 NABP1Q96AH0 204 aa10.63□□□□□ -0.71
COL3A1-206ENST00000487010 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 K7N7A8 449 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 M0R135 149 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 ANGPTL7O43827 346 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 ZFAND5O76080 213 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 DBHP09172 617 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 OR13C7P0DN81 318 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 GLB1P16278 677 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 FKBP2P26885 142 aaKnown RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 FXYD4P59646 89 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 CHAF1BQ13112 559 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 CLINT1Q14677 625 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 RSU1Q15404 277 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 NKAIN1Q4KMZ8 207 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 PHLDA2Q53GA4 152 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 FBXW12Q6X9E4 464 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 RABEPKQ7Z6M1 372 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 C1QL4Q86Z23 238 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 LGI3Q8N145 548 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 FADS6Q8N9I5 356 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 WDSUB1Q8N9V3 476 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 HSD17B11Q8NBQ5 300 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 SGK3Q96BR1 496 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 MSI2Q96DH6 328 aaKnown RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 ZNF799Q96GE5 643 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 YPEL4Q96NS1 127 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 ANGPTL4Q9BY76 406 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 SLC2A9Q9NRM0 540 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 ZNF581Q9P0T4 197 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 MED19A0JLT2 244 aaPredicted RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 SPRY1O43609 319 aaPredicted RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 IFNA17P01571 189 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 CHATP28329 748 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 PPP1CCP36873 323 aaKnown RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 RAB30Q15771 203 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 SNAI3Q3KNW1 292 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 WDR74Q6RFH5 385 aaPredicted RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 TMEM182Q6ZP80 229 aaPredicted RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 CPEB2Q7Z5Q1 589 aaKnown RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 LINC00469Q8N7U9 141 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 SMRP1Q8NCR6 262 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 OR5L1Q8NGL2 311 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 FAM213BQ8TBF2 198 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 SPSB1Q96BD6 273 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 MARS2Q96GW9 593 aaKnown RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 REEP6Q96HR9 211 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 CHRDQ9H2X0 955 aa10.62□□□□□ -0.71
COL3A1-206ENST00000487010 RCL1Q9Y2P8 373 aaKnown RBP10.62□□□□□ -0.71
COL3A1-206ENST00000487010 CCDC187A0A096LP49 1063 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 PPIHO43447 177 aaKnown RBP10.61□□□□□ -0.71
COL3A1-206ENST00000487010 OR2C1O95371 312 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 IGHV2-70P01814 119 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 GLI4P10075 376 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 RPS23P62266 143 aaKnown RBP10.61□□□□□ -0.71
COL3A1-206ENST00000487010 H3F3AP84243 136 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 SOHLH1Q5JUK2 328 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 ACER2Q5QJU3 275 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 SUMF2Q8NBJ7 301 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 SNIP1Q8TAD8 396 aaKnown RBP10.61□□□□□ -0.71
COL3A1-206ENST00000487010 EDARADDQ8WWZ3 215 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 NTNG2Q96CW9 530 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 SYT3Q9BQG1 590 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 TMPRSS5Q9H3S3 457 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 SMDT1Q9H4I9 107 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 TINAGQ9UJW2 476 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 VCANP13611 3396 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 IGKV1-27A0A075B6S5 117 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 A0A1B0GV50 99 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 FAM230AA0A1W2PPH8 454 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 UCP3P55916 312 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 SHBQ15464 509 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 IGSF11Q5DX21 431 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 SLC22A25Q6T423 547 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 HEPN1Q6WQI6 88 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 OR4D5Q8NGN0 318 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 DYRK2Q92630 601 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 SPTSSAQ969W0 71 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 SPACA9Q96E40 222 aaPredicted RBP10.61□□□□□ -0.71
COL3A1-206ENST00000487010 ZNF385AQ96PM9 386 aaKnown RBP10.61□□□□□ -0.71
COL3A1-206ENST00000487010 RARRES2Q99969 163 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 RBM24Q9BX46 236 aaKnown RBP10.61□□□□□ -0.71
COL3A1-206ENST00000487010 PLEK2Q9NYT0 353 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 TMED3Q9Y3Q3 217 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 PUS1Q9Y606 427 aaKnown RBP eCLIP10.61□□□□□ -0.71
COL3A1-206ENST00000487010 MTCH2Q9Y6C9 303 aa10.61□□□□□ -0.71
COL3A1-206ENST00000487010 TERTO14746 1132 aaKnown RBP10.6□□□□□ -0.71
COL3A1-206ENST00000487010 DHHO43323 396 aa10.6□□□□□ -0.71
COL3A1-206ENST00000487010 DKK1O94907 266 aa10.6□□□□□ -0.71
COL3A1-206ENST00000487010 TIAF1O95411 115 aa10.6□□□□□ -0.71
COL3A1-206ENST00000487010 CD63P08962 238 aa10.6□□□□□ -0.71
COL3A1-206ENST00000487010 EWSR1Q01844 656 aaKnown RBP eCLIP10.6□□□□□ -0.71
COL3A1-206ENST00000487010 GNMTQ14749 295 aa10.6□□□□□ -0.71
COL3A1-206ENST00000487010 ASCL4Q6XD76 172 aa10.6□□□□□ -0.71
COL3A1-206ENST00000487010 C20orf196Q8IYI0 205 aa10.6□□□□□ -0.71
COL3A1-206ENST00000487010 OR11L1Q8NGX0 322 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms