RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 E5RGE8 158 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 AP4M1O00189 453 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 NXPH3O95157 252 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 GLRA1P23415 457 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 TMPRSS3P57727 454 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 CEBPEQ15744 281 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 DMBX1Q8NFW5 382 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 LIN37Q96GY3 246 aaPredicted RBP9.74□□□□□ -0.85
HDAC6-228ENST00000486227 DDA1Q9BW61 102 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 NSG2Q9Y328 171 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 ABCD4O14678 606 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 GATCO43716 136 aaKnown RBP9.74□□□□□ -0.85
HDAC6-228ENST00000486227 DHRS3O75911 302 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 DFFBO76075 338 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 MT-CO2P00403 227 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 TNFRSF1AP19438 455 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 GUK1Q16774 197 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 TMEM108Q6UXF1 575 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 C9orf170A2RU37 121 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 CYTIPO60759 359 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 CYC1P08574 325 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 ASAH2BP0C7U1 165 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 CCL2P13500 99 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 PAX6P26367 422 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 ZNF83P51522 516 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 HNF4GQ14541 408 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 TMEM182Q6ZP80 229 aaPredicted RBP9.74□□□□□ -0.85
HDAC6-228ENST00000486227 RFLNBQ8N5W9 214 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 SPSB1Q96BD6 273 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 HIPK2Q9H2X6 1198 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 CNTD2Q9H8S5 307 aa9.74□□□□□ -0.85
HDAC6-228ENST00000486227 ACACAQ13085 2346 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 ZSWIM8A7E2V4 1837 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 MPTX1A8MV57 137 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 DUS4LO95620 317 aaKnown RBP9.73□□□□□ -0.85
HDAC6-228ENST00000486227 ACTL6AO96019 429 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 NGFRP08138 427 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 LIFP15018 202 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 GPM6AP51674 278 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 C3AR1Q16581 482 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 ZNF485Q8NCK3 441 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 OR8B12Q8NGG6 310 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 OR51A4Q8NGJ6 313 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 ADIPOR1Q96A54 375 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 MSI2Q96DH6 328 aaKnown RBP9.73□□□□□ -0.85
HDAC6-228ENST00000486227 RBMXL1Q96E39 390 aaKnown RBP9.73□□□□□ -0.85
HDAC6-228ENST00000486227 SHARPINQ9H0F6 387 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 ALX4Q9H161 411 aaPredicted RBP9.73□□□□□ -0.85
HDAC6-228ENST00000486227 TUBG2Q9NRH3 451 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 FLVCR1Q9Y5Y0 555 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 TRAV8-7A0A075B6U6 113 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 AQP7P3A6NL99 342 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 ZNF724A8MTY0 619 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 SH2D1BO14796 132 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 IL11P20809 199 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 PTGFRP43088 359 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 MAGEA5P43359 124 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 MRPS34P82930 218 aaKnown RBP9.73□□□□□ -0.85
HDAC6-228ENST00000486227 FAM209BQ5JX69 171 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 SDSLQ96GA7 329 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 ARHGAP5-AS1Q96IT6 56 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 RAB18Q9NP72 206 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 GLRX2Q9NS18 164 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 LNP1A1A4G5 178 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 WDR1O75083 606 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 TXNDC12O95881 172 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 IGLV3-19P01714 112 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 RPS4Y1P22090 263 aaKnown RBP9.73□□□□□ -0.85
HDAC6-228ENST00000486227 PLPPR5Q32ZL2 321 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 SHEQ5VZ18 495 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 C20orf196Q8IYI0 205 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 TMEM217Q8N7C4 229 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 OR5AP2Q8NGF4 316 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 CLDN23Q96B33 292 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 C17orf51A8MQB3 221 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 GNB2P62879 340 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 H3F3AP84243 136 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 FAHD2BQ6P2I3 314 aaPredicted RBP9.73□□□□□ -0.85
HDAC6-228ENST00000486227 S100A7AQ86SG5 101 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 PUSL1Q8N0Z8 303 aaKnown RBP9.73□□□□□ -0.85
HDAC6-228ENST00000486227 MRPS24Q96EL2 167 aaKnown RBP9.73□□□□□ -0.85
HDAC6-228ENST00000486227 FAHD2AQ96GK7 314 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 ESRP2Q9H6T0 727 aaKnown RBP9.73□□□□□ -0.85
HDAC6-228ENST00000486227 TMEM100Q9NV29 134 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 KLHDC2Q9Y2U9 406 aa9.73□□□□□ -0.85
HDAC6-228ENST00000486227 SERPINE3A8MV23 424 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 TIAF1O95411 115 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 MLF1P58340 268 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 NANOS3P60323 173 aaKnown RBP9.72□□□□□ -0.85
HDAC6-228ENST00000486227 RAB4BP61018 213 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 OR2T2Q6IF00 324 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 PRSS54Q6PEW0 395 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 FAM24BQ8N5W8 94 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 AK3Q9UIJ7 227 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 GAB2Q9UQC2 676 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 NEUROG3Q9Y4Z2 214 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 RAB27BO00194 218 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 CTXN2P0C2S0 81 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 OR3A4PP47883 348 aa9.72□□□□□ -0.85
HDAC6-228ENST00000486227 SLC26A10Q8NG04 563 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms