RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 TMEM9BQ9NQ34 198 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 BTRCQ9Y297 605 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 WSB1Q9Y6I7 421 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 XIRP1Q702N8 1843 aaKnown RBP3.32□□□□□ -1.88
VPS41-212ENST00000482217 WNK3Q9BYP7 1800 aa3.32□□□□□ -1.88
VPS41-212ENST00000482217 TP53BP1Q12888 1972 aaPredicted RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 ARAP1Q96P48 1450 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 A0A1W2PP64 1363 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 A0A1W2PRE2 83 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 A0A1W2PRG6 482 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 FAM92AA1XBS5 289 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 FOXI3A8MTJ6 420 aaPredicted RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 ZNF705EA8MWA4 302 aaPredicted RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 G3V2L1 256 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 SULT2B1O00204 365 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 ORC5O43913 435 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 NPIPB7O75200 414 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 PAK4O96013 591 aaPredicted RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 IGHV4-39P01824 125 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 PFN1P07737 140 aaKnown RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 CXCL2P19875 107 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 SDC4P31431 198 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 GPR183P32249 361 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 CTRLP40313 264 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 SOX3P41225 446 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 TSFMP43897 325 aaKnown RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 RBP2P50120 134 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 ATP4BP51164 291 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 RORCP51449 518 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 AKR1D1P51857 326 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 MAXP61244 160 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 GINS1Q14691 196 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 NECTIN1Q15223 517 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 SNRNP35Q16560 246 aaKnown RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 TMEM30BQ3MIR4 351 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 OR2T5Q6IEZ7 315 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 FOXL2NBQ6ZUU3 175 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 TMEM150AQ86TG1 271 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 CALHM3Q86XJ0 350 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 DOLPP1Q86YN1 238 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 RDH10Q8IZV5 341 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 UMODL1-AS1Q8N2C9 162 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 RFLNBQ8N5W9 214 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 ZNRF1Q8ND25 227 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 BEST4Q8NFU0 473 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 OR51G1Q8NGK1 321 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 OR9I1Q8NGQ6 314 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 OR2T4Q8NH00 348 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 OR2T29Q8NH02 315 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 OR1L3Q8NH93 324 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 OR51E1Q8TCB6 317 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 RGP1Q92546 391 aaPredicted RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 DIRAS2Q96HU8 199 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 BTF3L4Q96K17 158 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 DNAJC30Q96LL9 226 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 ZNF382Q96SR6 550 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 TCEAL7Q9BRU2 100 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 COA1Q9GZY4 146 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 EXOSC4Q9NPD3 245 aaKnown RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 DOK5Q9P104 306 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 C19orf25Q9UFG5 118 aaPredicted RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 RIMS3Q9UJD0 308 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 ST3GAL6Q9Y274 331 aa3.31□□□□□ -1.88
VPS41-212ENST00000482217 LSM5Q9Y4Y9 91 aaKnown RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 RBM7Q9Y580 266 aaKnown RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 GREB1LQ9C091 1923 aaPredicted RBP3.31□□□□□ -1.88
VPS41-212ENST00000482217 PIK3C2GO75747 1445 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 A0A087WX48 190 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 A0A0G2JLM5 398 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 LOC100131303A0A0U1RQF7 123 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 MAP1LC3B2A6NCE7 125 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 OR5H14A6NHG9 310 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 OR5H1A6NKK0 313 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 C11orf98E9PRG8 122 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 C16orf97H3BN30 126 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 HMGB3O15347 200 aaKnown RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 RGS5O15539 181 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 CHST10O43529 356 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 STK16O75716 305 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 CDK2AP2O75956 126 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 SOX14O95416 240 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 NGFP01138 241 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 IFNA4P05014 189 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 CSF3P09919 207 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 CD99P14209 185 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 PAX1P15863 534 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 MUC1P15941 1255 aaPredicted RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 IL1RNP18510 177 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 BCL3P20749 454 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 PRKACGP22612 351 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 AK4P27144 223 aaPredicted RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 FMO3P31513 532 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 OR1E2P47887 323 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 ERVFC1-1P60608 527 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 ABCE1P61221 599 aaKnown RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 RRAS2P62070 204 aaPredicted RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 TBPL1P62380 186 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 ZNF266Q14584 549 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 OR7A5Q15622 319 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 ZNF630Q2M218 657 aaPredicted RBP3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms