RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 HS3ST1O14792 307 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 RBBP9O75884 186 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 MT-ND2P03891 347 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ERCC1P07992 297 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 TACSTD2P09758 323 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 CCL2P13500 99 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF35P13682 527 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 GABRB1P18505 474 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ALOX5APP20292 161 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 GCH1P30793 250 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 APOBEC3AP31941 199 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 GLRXP35754 106 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 CEACAM6P40199 344 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 RPS27P42677 84 aaKnown RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 CX3CR1P49238 355 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 UCP2P55851 309 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 TAS2R60P59551 318 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 PPP3R1P63098 170 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 SPOCK1Q08629 439 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF718Q3SXZ3 478 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 OTPQ5XKR4 325 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF322Q6U7Q0 402 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 DRAM2Q6UX65 266 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 BTN2A1Q7KYR7 527 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 TMEM17Q86X19 198 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF584Q8IVC4 421 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF679Q8IYX0 411 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 C12orf45Q8N5I9 185 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ACBD7Q8N6N7 88 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF540Q8NDQ6 660 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 CPEB3Q8NE35 698 aaKnown RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 OR1J1Q8NGS3 322 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 HAVCR2Q8TDQ0 301 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ST7LQ8TDW4 575 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 SCARB1Q8WTV0 552 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 RNF133Q8WVZ7 376 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 RFT1Q96AA3 541 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 APOBEC3DQ96AK3 386 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF799Q96GE5 643 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF75AQ96N20 296 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 NEDD4LQ96PU5 975 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 TBX5Q99593 518 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 SOSTQ9BQB4 213 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 TMEM204Q9BSN7 226 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 PAPOLGQ9BWT3 736 aaKnown RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 CCDC90BQ9GZT6 254 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 MS4A7Q9GZW8 240 aaPredicted RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 PPIL3Q9H2H8 161 aaKnown RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF442Q9H7R0 627 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 MOB1AQ9H8S9 216 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 C19orf12Q9NSK7 152 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 PSORS1C1Q9UIG5 152 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 EXOGQ9Y2C4 368 aaKnown RBP5.3□□□□□ -1.56
SF3B1-209ENST00000479532 ALG5Q9Y673 324 aa5.3□□□□□ -1.56
SF3B1-209ENST00000479532 LOC100509620A0A075B734 347 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 MEIKINA0A087WXM9 373 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 A0A1W2PQL4 384 aaPredicted RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 ACOD1A6NK06 481 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 SHISA9B4DS77 424 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 M0R233 179 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 AKR7A2O43488 359 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 XRCC2O43543 280 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 PRAF2O60831 178 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 SMPD2O60906 423 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 WBP4O75554 376 aaKnown RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 PLATP00750 562 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 LCATP04180 440 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 SELEP16581 610 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 GCSHP23434 173 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 DCTDP32321 178 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 LIPAP38571 399 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 PRKXP51817 358 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 PPP1CBP62140 327 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 SNRPD2P62316 118 aaKnown RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 DHRS7BQ6IAN0 325 aaPredicted RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 LRRN1Q6UXK5 716 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 MRPL21Q7Z2W9 205 aaKnown RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 MYPOPQ86VE0 399 aaPredicted RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 MUC15Q8N387 334 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF611Q8N823 705 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 NKAIN3Q8N8D7 197 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 SYNPRQ8TBG9 265 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 GLYATL2Q8WU03 294 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 SMAP2Q8WU79 429 aaPredicted RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 TMEM171Q8WVE6 324 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 APH1BQ8WW43 257 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 MARS2Q96GW9 593 aaKnown RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 PGAM5Q96HS1 289 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 LINC00052Q96N35 136 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 OR8B4Q96RC9 309 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 CCL19Q99731 98 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 ALG8Q9BVK2 526 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 SLC25A32Q9H2D1 315 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 OR51B6Q9H340 312 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 PLK3Q9H4B4 646 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 AMBNQ9NP70 447 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 FGF20Q9NP95 211 aaPredicted RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 PNRC2Q9NPJ4 139 aaKnown RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 CA10Q9NS85 328 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 SLCO1C1Q9NYB5 712 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms