RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, human

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPHP4-208	ENST00000478423	STRAP	Q9Y3F4	350 aa	Known RBP	12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	GALR2	O43603	387 aa	Predicted RBP	12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	TTR	P02766	147 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	VSIG8	P0DPA2	414 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	ZNF17	P17021	662 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	ARL3	P36405	182 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	ZBTB37	Q5TC79	503 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	NHLRC1	Q6VVB1	395 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	HGD	Q93099	445 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	SLC25A32	Q9H2D1	315 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	GLRX2	Q9NS18	164 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	CTDSPL	O15194	276 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	ICMT	O60725	284 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	ZBTB25	P24278	435 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	KIR3DL2	P43630	455 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	FAM181A	Q8N9Y4	354 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	ZNF75A	Q96N20	296 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	ANGPTL4	Q9BY76	406 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	TTTY12	Q9BZ98	90 aa		12.51	□□□□□ -0.41
NPHP4-208	ENST00000478423	C9orf170	A2RU37	121 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	CLEC18A	A5D8T8	446 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	BTBD17	A6NE02	478 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	HEXA	P06865	529 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	CALCR	P30988	508 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	GABRA4	P48169	554 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	RPS16	P62249	146 aa	Known RBP	12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	HIKESHI	Q53FT3	197 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	TEX261	Q6UWH6	196 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	CLEC18C	Q8NCF0	446 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	LHX4	Q969G2	390 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	PSENEN	Q9NZ42	101 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423		U3KQ87	197 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	HEATR5B	Q9P2D3	2071 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	C3orf80	F5H4A9	247 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	DUS4L	O95620	317 aa	Known RBP	12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	IGLV3-19	P01714	112 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	ACKR3	P25106	362 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	CEACAM6	P40199	344 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	EFNB2	P52799	333 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	SLC36A1	Q7Z2H8	476 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	MED30	Q96HR3	178 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	C20orf24	Q9BUV8	137 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	MRPS18B	Q9Y676	258 aa	Known RBP	12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423		M0R1X1	148 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	GSTZ1	O43708	216 aa	Predicted RBP	12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	LANCL1	O43813	399 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	CD82	P27701	267 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	SUB1	P53999	127 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	KLF3	P57682	345 aa	Predicted RBP	12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	HAGH	Q16775	308 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	MOB1B	Q7L9L4	216 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	LRRC29	Q8WV35	223 aa		12.5	□□□□□ -0.41
NPHP4-208	ENST00000478423	ZNF236	Q9UL36	1845 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	GEMIN2	O14893	280 aa	Known RBP	12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	BCL2L11	O43521	198 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	FTH1P19	P0C7X4	201 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CD37	P11049	281 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	ADIRF	Q15847	76 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	FAM27B	Q5VT28	67 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	SPIC	Q8N5J4	248 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	TMEM251	Q8N6I4	163 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CIB3	Q96Q77	187 aa	Predicted RBP	12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	PECR	Q9BY49	303 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	PPP1R3E	Q9H7J1	279 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	GNG13	Q9P2W3	67 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	ANXA10	Q9UJ72	324 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	TINAG	Q9UJW2	476 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CACNA1B	Q00975	2339 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	SFT2D2	O95562	160 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	FBXW9	Q5XUX1	488 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	ZFP62	Q8NB50	900 aa	Predicted RBP	12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	ERGIC1	Q969X5	290 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	SLC35E1	Q96K37	410 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	QPCTL	Q9NXS2	382 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	TMED3	Q9Y3Q3	217 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	SBF1	O95248	1867 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423		A0A0G2JMZ2	1700 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	IGKV1D-42	A0A075B6H8	117 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	FAM90A27P	A6NNH2	459 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CDIPT	O14735	213 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	TMEM123	Q8N131	208 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	C10orf35	Q96D05	121 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	RALGAPA1	Q6GYQ0	2036 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	ADAP1	O75689	374 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	SP9	P0CG40	484 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CT45A6	P0DMU7	189 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CT45A5	P0DMU8	189 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CT45A7	P0DMV0	189 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	TAGLN2	P37802	199 aa	Known RBP	12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CT45A1	Q5HYN5	189 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	OR10AD1	Q8NGE0	317 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CT45A3	Q8NHU0	189 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CCL17	Q92583	94 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	PIK3IP1	Q96FE7	263 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	ST6GAL2	Q96JF0	529 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CHST5	Q9GZS9	411 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	CHRNA10	Q9GZZ6	450 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	RAB18	Q9NP72	206 aa		12.49	□□□□□ -0.41
NPHP4-208	ENST00000478423	KIF26B	Q2KJY2	2108 aa		12.48	□□□□□ -0.41
NPHP4-208	ENST00000478423	DEFB108A	A8MXU0	73 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms