RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 DNAJC8O75937 253 aaPredicted RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 NPPAP01160 153 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 IGKV1D-33P01593 117 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 IGKV1-33P01594 117 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 LGALS1P09382 135 aaKnown RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 FAM106CPP0CH98 169 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 TNFRSF1BP20333 461 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 CD34P28906 385 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 DDOSTP39656 456 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 RBM34P42696 430 aaKnown RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 CDKN2AP42771 156 aaKnown RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 GSK3AP49840 483 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 RAB9AP51151 201 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 MECP2P51608 486 aaKnown RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 GPM6AP51674 278 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 PRKXP51817 358 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 TPTEP56180 551 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 EDDM3BP56851 147 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 ZP1P60852 638 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 FADDQ13158 208 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 PRDX4Q13162 271 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 KRR1Q13601 381 aaKnown RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 SNCBQ16143 134 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 LGALS9BQ3B8N2 356 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 LRRC23Q53EV4 343 aaPredicted RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 C19orf54Q5BKX5 351 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 GCNT6Q5T4J0 391 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 Q5VSD8 79 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 RAB12Q6IQ22 244 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 NANOGP8Q6NSW7 305 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 PRSS45Q7RTY3 260 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 SPATA24Q86W54 205 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 TGIF2LXQ8IUE1 241 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 C10orf67Q8IYJ2 551 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 PGAM4Q8N0Y7 254 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 CCDC63Q8NA47 563 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 AQP3Q92482 292 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 RGP1Q92546 391 aaPredicted RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 GTF2H4Q92759 462 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 SGK3Q96BR1 496 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 KCTD12Q96CX2 325 aaKnown RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 MICU1Q9BPX6 476 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 NEURL2Q9BR09 285 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 CHCHD6Q9BRQ6 235 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 TINAGL1Q9GZM7 467 aaPredicted RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 C20orf27Q9GZN8 174 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 LIN7CQ9NUP9 197 aaKnown RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 MRPL22Q9NWU5 206 aaKnown RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 THUMPD1Q9NXG2 353 aaKnown RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 A4GNTQ9UNA3 340 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 TMEM5Q9Y2B1 443 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 UTP11Q9Y3A2 253 aaKnown RBP3.57□□□□□ -1.84
USP4-209ENST00000475873 WSB1Q9Y6I7 421 aa3.57□□□□□ -1.84
USP4-209ENST00000475873 A0A087WUV0 522 aaPredicted RBP3.56□□□□□ -1.84
USP4-209ENST00000475873 IGHV3-72A0A0B4J1Y9 119 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 OR6C68A6NDL8 312 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 PRORSD1PA6NEY8 169 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 TMEM210A6NLX4 147 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 J3QL48 77 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 SLC1A7O00341 560 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 SHOXO15266 292 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 AHCYL1O43865 530 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 NDUFB8O95169 186 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 IGHV3-11P01762 117 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 CSN3P07498 182 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 CD14P08571 375 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 TROVE2P10155 538 aaKnown RBP eCLIP3.56□□□□□ -1.84
USP4-209ENST00000475873 CTRB1P17538 263 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 VDAC1P21796 283 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 NOS3P29474 1203 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 SOX6P35712 828 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 OR1E2P47887 323 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 FXYD6P3P58550 94 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 SCARB2Q14108 478 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 EBI3Q14213 229 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 HES1Q14469 280 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 EDDM3AQ14507 147 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 TM4SF20Q53R12 229 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 AADACL4Q5VUY2 407 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 CTRB2Q6GPI1 263 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 LIN54Q6MZP7 749 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 OGFOD2Q6N063 350 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 BLOC1S3Q6QNY0 202 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 DRAM2Q6UX65 266 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 CPLX4Q7Z7G2 160 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 KRT73Q86Y46 540 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 ZNF781Q8N8C0 355 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 POC1AQ8NBT0 407 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 FAM156AQ8NDB6 213 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 OR52N4Q8NGI2 321 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 OR9I1Q8NGQ6 314 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 TAMM41Q96BW9 452 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 ANAPC16Q96DE5 110 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 BPIFA2Q96DR5 249 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 ZNF503Q96F45 646 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 REEP6Q96HR9 211 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 EAF1Q96JC9 268 aaPredicted RBP3.56□□□□□ -1.84
USP4-209ENST00000475873 RNF170Q96K19 258 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 ZNF570Q96NI8 536 aa3.56□□□□□ -1.84
USP4-209ENST00000475873 NRIP2Q9BQI9 281 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms