RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 Q6ZSR6 202 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 ZNF283Q8N7M2 679 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 OR13H1Q8NG92 308 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 ADIPOR1Q96A54 375 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 NEU1Q99519 415 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 LANCL2Q9NS86 450 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 CPAMD8Q8IZJ3 1885 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 IGHV3-20A0A0C4DH32 117 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 FAM221BA6H8Z2 402 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 GZMBP10144 247 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 FCGR2AP12318 317 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 HSD11B2P80365 405 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 TMEM187Q14656 261 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 TAF9Q16594 264 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 RBM14Q96PK6 669 aaKnown RBP10.23□□□□□ -0.77
CPSF3-202ENST00000460593 CERS4Q9HA82 394 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 STRAPQ9Y3F4 350 aaKnown RBP10.23□□□□□ -0.77
CPSF3-202ENST00000460593 FTCDNL1E5RQL4 147 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 RPL36A-HNRNPH2H7BZ11 118 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 PHF1O43189 567 aaPredicted RBP10.23□□□□□ -0.77
CPSF3-202ENST00000460593 TUBG1P23258 451 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 RABIFP47224 123 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 SLC6A8P48029 635 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 RAB11AP62491 216 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 NUP54Q7Z3B4 507 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 HAS2Q92819 552 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 TVP23CQ96ET8 276 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 NIPSNAP3BQ9BS92 247 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 SOHLH2Q9NX45 425 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 NCOA6Q14686 2063 aaPredicted RBP10.23□□□□□ -0.77
CPSF3-202ENST00000460593 TRANK1O15050 2925 aa10.23□□□□□ -0.77
CPSF3-202ENST00000460593 GLIPR1P48060 266 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 RPL23AP62750 156 aaKnown RBP10.22□□□□□ -0.77
CPSF3-202ENST00000460593 HNF4GQ14541 408 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 PRSS8Q16651 343 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 C2orf88Q9BSF0 95 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 CALHM2Q9HA72 323 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 GNG13Q9P2W3 67 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 ZFP92A6NM28 416 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 A8MWP6 167 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 C9J4A7 227 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 SPRY1O43609 319 aaPredicted RBP10.22□□□□□ -0.77
CPSF3-202ENST00000460593 SSSCA1O60232 199 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 KLF8O95600 359 aaPredicted RBP10.22□□□□□ -0.77
CPSF3-202ENST00000460593 IL18BPO95998 194 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 CTSDP07339 412 aaPredicted RBP10.22□□□□□ -0.77
CPSF3-202ENST00000460593 HNRNPA1P09651 372 aaKnown RBP eCLIP10.22□□□□□ -0.77
CPSF3-202ENST00000460593 FGF8P55075 233 aaPredicted RBP10.22□□□□□ -0.77
CPSF3-202ENST00000460593 HLA-DQA1Q5Y7H0 255 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 LRRC18Q8N456 261 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 TMEM68Q96MH6 324 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 MRPL37Q9BZE1 423 aaKnown RBP10.22□□□□□ -0.77
CPSF3-202ENST00000460593 FBLN5Q9UBX5 448 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 OR14J1Q9UGF5 321 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 SUSD2Q9UGT4 822 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 NKX2-6A6NCS4 301 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 CCDC85CA6NKD9 419 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 SHISA7A6NL88 538 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 F5H5K5 113 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 ST8SIA3O43173 380 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 IFI6P09912 130 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 PGA3P0DJD8 388 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 ZNF728P0DKX0 622 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 GFERP55789 205 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 MPV17LQ2QL34 196 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 DNM1P34Q6PK57 102 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 SLC22A18ASQ8N1D0 253 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 SLC35G3Q8N808 338 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 OR2AJ1Q8NGZ0 328 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 ZNF721Q8TF20 911 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 TPSD1Q9BZJ3 242 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 NAA60Q9H7X0 242 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 GLRX2Q9NS18 164 aa10.22□□□□□ -0.77
CPSF3-202ENST00000460593 PCDH15Q96QU1 1955 aa10.21□□□□□ -0.77
CPSF3-202ENST00000460593 H3BP45 60 aa10.21□□□□□ -0.77
CPSF3-202ENST00000460593 DDAH2O95865 285 aa10.21□□□□□ -0.77
CPSF3-202ENST00000460593 AMBPP02760 352 aa10.21□□□□□ -0.77
CPSF3-202ENST00000460593 SUCLG1P53597 346 aaKnown RBP10.21□□□□□ -0.77
CPSF3-202ENST00000460593 HIST2H3PS2Q5TEC6 136 aa10.21□□□□□ -0.77
CPSF3-202ENST00000460593 OR5C1Q8NGR4 320 aa10.21□□□□□ -0.77
CPSF3-202ENST00000460593 A6NIZ1 184 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 HOXB2P14652 356 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 ZNF43P17038 809 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 KIR2DL1P43626 348 aaPredicted RBP10.21□□□□□ -0.78
CPSF3-202ENST00000460593 LBX1P52954 281 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 HSD17B7P56937 341 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 RAP1BP61224 184 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 P2RY6Q15077 328 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 CXorf66Q5JRM2 361 aaPredicted RBP10.21□□□□□ -0.78
CPSF3-202ENST00000460593 DEGS2Q6QHC5 323 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 GRINAQ7Z429 371 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 YAF2Q8IY57 180 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 BOD1Q96IK1 185 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 LYZL4Q96KX0 146 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 SLC46A1Q96NT5 459 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 TP53RKQ96S44 253 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 DDA1Q9BW61 102 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 BCO1Q9HAY6 547 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 SLC2A9Q9NRM0 540 aa10.21□□□□□ -0.78
CPSF3-202ENST00000460593 CBLN4Q9NTU7 201 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms