RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 BORCS8Q96FH0 119 aa9.83□□□□□ -0.84
USP40-210ENST00000454354 AJUBAQ96IF1 538 aa9.83□□□□□ -0.84
USP40-210ENST00000454354 MYCBPQ99417 103 aaPredicted RBP9.83□□□□□ -0.84
USP40-210ENST00000454354 AASSQ9UDR5 926 aa9.83□□□□□ -0.84
USP40-210ENST00000454354 VPREB3Q9UKI3 123 aa9.83□□□□□ -0.84
USP40-210ENST00000454354 A0A1W2PRD5 423 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 A0A1W2PRF3 423 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 A0A1W2PRM7 423 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 MEIOCA2RUB1 952 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 CLPSL1A2RUU4 121 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 OR4C45A6NMZ5 311 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 CHRM2P08172 466 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 PRKACBP22694 351 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 AZGP1P25311 298 aaKnown RBP9.82□□□□□ -0.84
USP40-210ENST00000454354 RBP2P50120 134 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 ATP1B3P54709 279 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 COL10A1Q03692 680 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 GALEQ14376 348 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 ZNF273Q14593 569 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 TMEM200BQ69YZ2 307 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 ZBTB49Q6ZSB9 765 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 SLC25A26Q70HW3 274 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 MKXQ8IYA7 352 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 OR5R1Q8NH85 324 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 SLAMF9Q96A28 289 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 SPSB1Q96BD6 273 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 MRPL48Q96GC5 212 aaKnown RBP9.82□□□□□ -0.84
USP40-210ENST00000454354 C4orf36Q96KX1 117 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 Q96MT0 163 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 ZNF649Q9BS31 505 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 ALG8Q9BVK2 526 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 INPP5EQ9NRR6 644 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 MRPS18AQ9NVS2 196 aaKnown RBP9.82□□□□□ -0.84
USP40-210ENST00000454354 HHLA2Q9UM44 414 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 SF3B6Q9Y3B4 125 aaKnown RBP9.82□□□□□ -0.84
USP40-210ENST00000454354 NOTCH1P46531 2555 aa9.82□□□□□ -0.84
USP40-210ENST00000454354 TRBV2A0A0J9YWF9 115 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 LOC100130705A0A1B0GUX0 176 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 hCG_1809904A0A1W2PP81 198 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 A0A1W2PPE2 198 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 A0A1W2PR64 198 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 A0A1W2PRV1 198 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 BTBD17A6NE02 478 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 C17orf98A8MV24 154 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 J3QLW9 94 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 ANGPTL7O43827 346 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 FADS2O95864 444 aaKnown RBP9.81□□□□□ -0.84
USP40-210ENST00000454354 PAHP00439 452 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 RBP4P02753 201 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 MT-ND2P03891 347 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 ZNF19P17023 458 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 ZNF20P17024 532 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 ATF1P18846 271 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 DLX6P56179 175 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 RAB40BQ12829 278 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 ALKBH1Q13686 389 aaKnown RBP9.81□□□□□ -0.84
USP40-210ENST00000454354 AANATQ16613 207 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 LHFPL2Q6ZUX7 228 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 OR8H2Q8N162 312 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 ASCC1Q8N9N2 400 aaKnown RBP9.81□□□□□ -0.84
USP40-210ENST00000454354 ZSCAN4Q8NAM6 433 aaPredicted RBP9.81□□□□□ -0.84
USP40-210ENST00000454354 OR4M1Q8NGD0 313 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 OR51A4Q8NGJ6 313 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 OR10AC1Q8NH08 325 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 LINC01006Q8NI28 216 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 EMG1Q92979 244 aaKnown RBP9.81□□□□□ -0.84
USP40-210ENST00000454354 FGGYQ96C11 551 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 RDH12Q96NR8 316 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 CITED1Q99966 193 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 MEGF9Q9H1U4 602 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 HEXA-AS1Q9H8Q6 139 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 FAM118AQ9NWS6 357 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 MYRFQ9Y2G1 1151 aa9.81□□□□□ -0.84
USP40-210ENST00000454354 CLPXO76031 633 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 RPSAP08865 295 aaKnown RBP9.8□□□□□ -0.84
USP40-210ENST00000454354 CCL3L1P16619 93 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 MTCP1P56278 107 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 ERVFRD-1P60508 538 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 MEF2CQ06413 473 aaPredicted RBP9.8□□□□□ -0.84
USP40-210ENST00000454354 MRPL28Q13084 256 aaKnown RBP9.8□□□□□ -0.84
USP40-210ENST00000454354 ZNF146Q15072 292 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 ZSCAN26Q16670 478 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 SPIN3Q5JUX0 258 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 DHRS7BQ6IAN0 325 aaPredicted RBP9.8□□□□□ -0.84
USP40-210ENST00000454354 C17orf107Q6ZR85 190 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 Q6ZSV7 163 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 LHFPL3Q86UP9 236 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 HAVCR2Q8TDQ0 301 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 C17orf50Q8WW18 174 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 APH1BQ8WW43 257 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 SNX22Q96L94 193 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 OPALINQ96PE5 141 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 JAM3Q9BX67 310 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 C16orf95Q9H693 158 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 RBFOX1Q9NWB1 397 aaKnown RBP9.8□□□□□ -0.84
USP40-210ENST00000454354 ERVK13-1Q9NX77 482 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 IL36RNQ9UBH0 155 aa9.8□□□□□ -0.84
USP40-210ENST00000454354 RPL36Q9Y3U8 105 aaKnown RBP9.8□□□□□ -0.84
USP40-210ENST00000454354 TET2Q6N021 2002 aaPredicted RBP9.79□□□□□ -0.84
USP40-210ENST00000454354 TMEM82A0PJX8 343 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms