RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 PDZK1IP1Q13113 114 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 SNAI3Q3KNW1 292 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 ABCA11PQ4W5N1 156 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 AVPI1Q5T686 147 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 GPR157Q5UAW9 335 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 SAP25Q8TEE9 199 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 WNT2BQ93097 391 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 MRPL24Q96A35 216 aaKnown RBP9.84□□□□□ -0.83
USP4-205ENST00000431357 CLDN23Q96B33 292 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 BORCS8Q96FH0 119 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 POM121Q96HA1 1249 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 REEP6Q96HR9 211 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 GNRHR2Q96P88 292 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 UCN2Q96RP3 112 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 SYT3Q9BQG1 590 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 WNT5BQ9H1J7 359 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 ARV1Q9H2C2 271 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 OPA3Q9H6K4 179 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 BCO1Q9HAY6 547 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 SH2D2AQ9NP31 389 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 OCIAD1Q9NX40 245 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 TREM2Q9NZC2 230 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 AK3Q9UIJ7 227 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 LSM5Q9Y4Y9 91 aaKnown RBP9.84□□□□□ -0.83
USP4-205ENST00000431357 KPTNQ9Y664 436 aa9.84□□□□□ -0.83
USP4-205ENST00000431357 BORCS7-ASMTA0A0B4J1R7 106 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 A0A0J9YW62 118 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 SYNGR3O43761 229 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 SEC11BP0C7V7 166 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 PAX6P26367 422 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 CHATP28329 748 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 GPX4P36969 197 aaPredicted RBP9.83□□□□□ -0.84
USP4-205ENST00000431357 CHAF1BQ13112 559 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 TMEM187Q14656 261 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 PEA15Q15121 130 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 LYSMD4Q5XG99 296 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 Q6ZRG5 221 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 DTX1Q86Y01 620 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 ZNF100Q8IYN0 542 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 KDF1Q8NAX2 398 aaPredicted RBP9.83□□□□□ -0.84
USP4-205ENST00000431357 OR1F12Q8NHA8 337 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 KIRREL1Q96J84 757 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 SULT4A1Q9BR01 284 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 HDHD3Q9BSH5 251 aaPredicted RBP9.83□□□□□ -0.84
USP4-205ENST00000431357 FAAP24Q9BTP7 215 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 RGCCQ9H4X1 137 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 PROK2Q9HC23 129 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 IL36GQ9NZH8 169 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 FAM230AA0A1W2PPH8 454 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 H7C1Q1 480 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 SLC31A2O15432 143 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 GPR137BO60478 399 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 COX6A1P12074 109 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 ACKR3P25106 362 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 PMELP40967 661 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 UCP3P55916 312 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 RAC3P60763 192 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 SSX2Q16385 188 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 TAF9Q16594 264 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 TMEM42Q69YG0 159 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 SSX9Q7RTT3 188 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 TMEM156Q8N614 296 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 CPT1CQ8TCG5 803 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 KCNE4Q8WWG9 221 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 EDARADDQ8WWZ3 215 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 TECTBQ96PL2 329 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 AKIRIN1Q9H9L7 192 aaPredicted RBP9.83□□□□□ -0.84
USP4-205ENST00000431357 SMCO4Q9NRQ5 59 aa9.83□□□□□ -0.84
USP4-205ENST00000431357 SPTBN5Q9NRC6 3674 aaKnown RBP9.83□□□□□ -0.84
USP4-205ENST00000431357 C9J4A7 227 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 F12P00748 615 aaPredicted RBP9.82□□□□□ -0.84
USP4-205ENST00000431357 CELA2AP08217 269 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 FOLR2P14207 255 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 CD80P33681 288 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 RAB5CP51148 216 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 IL13RA2Q14627 380 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 OR8B8Q15620 311 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 KRTAP27-1Q3LI81 207 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 LIAT1Q6ZQX7 453 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 RPS19BP1Q86WX3 136 aaKnown RBP9.82□□□□□ -0.84
USP4-205ENST00000431357 LGI3Q8N145 548 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 OSR2Q8N2R0 312 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 CCDC71LQ8N9Z2 235 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 RTN4IP1Q8WWV3 396 aaPredicted RBP9.82□□□□□ -0.84
USP4-205ENST00000431357 ZNF286AQ9HBT8 521 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 SLC7A11Q9UPY5 501 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 PTRH2Q9Y3E5 179 aaKnown RBP9.82□□□□□ -0.84
USP4-205ENST00000431357 UBE2CO00762 179 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 TNFSF11O14788 317 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 MSTNO14793 375 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 SPRY1O43609 319 aaPredicted RBP9.82□□□□□ -0.84
USP4-205ENST00000431357 ANGPTL7O43827 346 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 TSPAN15O95858 294 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 SCGB1D2O95969 90 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 NRASP01111 189 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 MBPP02686 304 aaPredicted RBP9.82□□□□□ -0.84
USP4-205ENST00000431357 LCATP04180 440 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 UMODP07911 640 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 DUSP1P28562 367 aa9.82□□□□□ -0.84
USP4-205ENST00000431357 P2RY1P47900 373 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms