RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MELTFP08582 738 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 ZNF728P0DKX0 622 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 DHODHQ02127 395 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 SRSF6Q13247 344 aaKnown RBP11.62□□□□□ -0.55
VPS54-203ENST00000409558 IKZF1Q13422 519 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 OR1C1Q15619 314 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 HIST3H3Q16695 136 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 RPUSD3Q6P087 351 aaKnown RBP11.62□□□□□ -0.55
VPS54-203ENST00000409558 GGNQ86UU5 652 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 SGCZQ96LD1 299 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 WNT5BQ9H1J7 359 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 SAV1Q9H4B6 383 aaPredicted RBP11.62□□□□□ -0.55
VPS54-203ENST00000409558 GPR35Q9HC97 309 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 ONECUT2O95948 504 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 TPT1P13693 172 aaKnown RBP11.61□□□□□ -0.55
VPS54-203ENST00000409558 CAV2P51636 162 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 TAS2R46P59540 309 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 TLE1Q04724 770 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 SMCO1Q147U7 214 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 FAM27BQ5VT28 67 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 MRPL21Q7Z2W9 205 aaKnown RBP11.61□□□□□ -0.55
VPS54-203ENST00000409558 M1APQ8TC57 530 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 OR2H1Q9GZK4 316 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 GJE1A6NN92 205 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 TTLL8A6PVC2 850 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 H3BP45 60 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 ACTL6AO96019 429 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 IFNA21P01568 189 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 SRD5A2P31213 254 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 GGNBP1Q5YKI7 109 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 HAGHLQ6PII5 290 aaPredicted RBP11.61□□□□□ -0.55
VPS54-203ENST00000409558 PP6455Q8WZ26 134 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 PTX4Q96A99 478 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 ANXA10Q9UJ72 324 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 TIMM10BQ9Y5J6 103 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 LOC102723996A0A087X1L8 192 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 K7EPK0 472 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 HERV-K104P61576 105 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 NSUN5P2Q63ZY6 315 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 ARRDC1Q8N5I2 433 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 FAM71E2Q8N5Q1 922 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 OR52H1Q8NGJ2 320 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 WBP1Q96G27 269 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 PLPPR2Q96GM1 343 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 PRELID1Q9Y255 219 aa11.61□□□□□ -0.55
VPS54-203ENST00000409558 IGLV3-32A0A0A0MS00 114 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 NPIPB13A6NJU9 1138 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 NPIPB4C9JG80 1138 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 NTN3O00634 580 aaPredicted RBP11.6□□□□□ -0.55
VPS54-203ENST00000409558 TSPAN9O75954 239 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 TNFSF15O95150 251 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 FPR2P25090 351 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 TAS2R31P59538 309 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 CRIP3Q6Q6R5 217 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 ETV3LQ6ZN32 361 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 TMEM54Q969K7 222 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 ZNF503-AS2A6NEH8 195 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 C9orf172C9J069 976 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 ABCD4O14678 606 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 LILRA1O75019 489 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 NFYBP25208 207 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 CD80P33681 288 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 MRPS34P82930 218 aaKnown RBP11.6□□□□□ -0.55
VPS54-203ENST00000409558 TMEM164Q5U3C3 297 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 OVCH2Q7RTZ1 564 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 OSR2Q8N2R0 312 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 RNASE11Q8TAA1 199 aaKnown RBP11.6□□□□□ -0.55
VPS54-203ENST00000409558 PIK3IP1Q96FE7 263 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 FZR1Q9UM11 496 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 A0A087WZY1 265 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 A0A1B0GW55 424 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 SYNGR3O43761 229 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 SCGNO76038 276 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 CD8AP01732 235 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 DUX4L2P0CJ85 424 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 DUX4L3P0CJ86 424 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 DUX4L4P0CJ87 422 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 DUX4L5P0CJ88 424 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 DUX4L6P0CJ89 424 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 DUX4L7P0CJ90 424 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 BCL3P20749 454 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 RAB1AP62820 205 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 MALLQ13021 153 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 C2CD4CQ8TF44 421 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 STRADBQ9C0K7 418 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 DUX4Q9UBX2 424 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 FOXD3Q9UJU5 478 aaPredicted RBP11.6□□□□□ -0.55
VPS54-203ENST00000409558 DOCK11Q5JSL3 2073 aa11.6□□□□□ -0.55
VPS54-203ENST00000409558 ZNF716A6NP11 495 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 FAM3AP98173 230 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 RAB35Q15286 201 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 OR2T2Q6IF00 324 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 OR51H1Q8NH63 302 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 MARC2Q969Z3 335 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 TAF9BQ9HBM6 251 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 KRBOX1C9JBD0 128 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 TFF1P04155 84 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 B3GALT5-AS1P59052 145 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 CNN3Q15417 329 aaKnown RBP11.59□□□□□ -0.55
VPS54-203ENST00000409558 SWI5Q1ZZU3 235 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms