RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 AVPR2P30518 371 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 SLC6A1P30531 599 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 WDR38Q5JTN6 314 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 BHLHA15Q7RTS1 189 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 C5orf17Q8NAS9 161 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 OR10G4Q8NGN3 311 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 OR10G9Q8NGN4 311 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 OR10G7Q8NGN6 311 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 MMP24Q9Y5R2 645 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 SULT1A2P50226 295 aa11.4□□□□□ -0.59
CCDC88C-204ENST00000389857 SMAGPQ0VAQ4 97 aa11.4□□□□□ -0.59
CCDC88C-204ENST00000389857 ZNF774Q6NX45 483 aa11.4□□□□□ -0.59
CCDC88C-204ENST00000389857 ANAPC16Q96DE5 110 aa11.4□□□□□ -0.59
CCDC88C-204ENST00000389857 PERPQ96FX8 193 aa11.4□□□□□ -0.59
CCDC88C-204ENST00000389857 PLPPR2Q96GM1 343 aa11.4□□□□□ -0.59
CCDC88C-204ENST00000389857 GPR87Q9BY21 358 aa11.4□□□□□ -0.59
CCDC88C-204ENST00000389857 TMPRSS13Q9BYE2 586 aa11.4□□□□□ -0.59
CCDC88C-204ENST00000389857 MT-CO3P00414 261 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 PPOXP50336 477 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 PMS2P11Q13670 270 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 ZNF141Q15928 474 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 TNXAQ16473 311 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 DEGS2Q6QHC5 323 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 Q7L0L9 218 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 MAP1LC3CQ9BXW4 147 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 VN1R1Q9GZP7 353 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 KCNE3Q9Y6H6 103 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 OOEPA6NGQ2 149 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 F2RL2O00254 374 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 CD3EP07766 207 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 OR10D3Q8NH80 312 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 ORAI1Q96D31 301 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 PIK3IP1Q96FE7 263 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 SLC25A22Q9H936 323 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 BET1LQ9NYM9 111 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 LINC01565O15544 149 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 PLPP2O43688 288 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 DEDDO75618 318 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 MBPP02686 304 aaPredicted RBP11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 OR4D9Q8NGE8 314 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 IL20Q9NYY1 176 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 DOK5Q9P104 306 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 TRAPPC4Q9Y296 219 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 M0R2Z0 102 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 RGS13O14921 159 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 CSF2RBP32927 897 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 PABPC1L2AQ5JQF8 200 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 FGF14Q92915 247 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 EXOGQ9Y2C4 368 aaKnown RBP11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 SPINK4O60575 86 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 GABRG2P18507 467 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 SLC25A30Q5SVS4 291 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 MS4A10Q96PG2 267 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 DUXBA0A1W2PPF3 345 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 M0R143 59 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 C21orf58P58505 322 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 ANKRD34AQ69YU3 496 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 GABRG3Q99928 467 aa11.39□□□□□ -0.59
CCDC88C-204ENST00000389857 PDCD6O75340 191 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 GCSHP23434 173 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 GZMKP49863 264 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 DMRTC1Q5HYR2 192 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 GUSBP11Q6P575 273 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 LIAT1Q6ZQX7 453 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 TGIF2LYQ8IUE0 185 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 CARFQ8N187 725 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 TECRQ9NZ01 308 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 OR5V1Q9UGF6 321 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 NKX2-2O95096 273 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 MYF5P13349 255 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 OR3A1P47881 315 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 CLLU1Q5K131 121 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 GNRHR2Q96P88 292 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 SIGLEC7Q9Y286 467 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 INHBBP09529 407 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 GABRA1P14867 456 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 ZNF32P17041 273 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 RIGQ13278 110 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 C1RLQ9NZP8 487 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 TCFL5Q9UL49 500 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 PRSS1P07477 247 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 TIAL1Q01085 375 aaKnown RBP eCLIP11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 FZD5Q13467 585 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 ACER2Q5QJU3 275 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 SPICQ8N5J4 248 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 ADIPOR1Q96A54 375 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 KCNK15Q9H427 330 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 AHDC1Q5TGY3 1603 aaPredicted RBP11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 A0A1W2PR80 420 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 SEMA7AO75326 666 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 FAM27D1Q5T7N8 215 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 IL21Q9HBE4 155 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 TNFRSF19Q9NS68 423 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 SIRT3Q9NTG7 399 aaPredicted RBP11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 IGSF23A1L1A6 192 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 RER1O15258 196 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 CXCL10P02778 98 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 GAMTQ14353 236 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 MRPL37Q9BZE1 423 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 WASHC3Q9Y3C0 194 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms