RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 L7N2F9 121 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 CRYAAP02489 173 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 CPT2P23786 658 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 SRSF4Q08170 494 aaKnown RBP15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 OPCMLQ14982 345 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 SAXO1Q8IYX7 474 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 OR52B4Q8NGK2 314 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 OR5D18Q8NGL1 313 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 CMBLQ96DG6 245 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 MRPS24Q96EL2 167 aaKnown RBP15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 LRRC46Q96FV0 321 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 POM121Q96HA1 1249 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 IL36GQ9NZH8 169 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 MYEF2Q9P2K5 600 aaKnown RBP15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 AUP1Q9Y679 476 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 DMXL2Q8TDJ6 3036 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 CFAP47Q6ZTR5 3102 aa15.62■□□□□ 0.09
CCDC88C-203ENST00000389856 IGHV2OR16-5A0A0B4J2B6 119 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 IGHV1-18A0A0C4DH31 117 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 MCRIP1C9JLW8 97 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 M0QYG6 137 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 CA11O75493 328 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 GCH1P30793 250 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 RAB14P61106 215 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 SEC61A1P61619 476 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 RPS27AP62979 156 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 FGL1Q08830 312 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 GRK1Q15835 563 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 ZNF718Q3SXZ3 478 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 ESCO2Q56NI9 601 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 ATPAF1Q5TC12 328 aaPredicted RBP15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 THOC7Q6I9Y2 204 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 ASCL4Q6XD76 172 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 SLC25A42Q86VD7 318 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 MYPOPQ86VE0 399 aaPredicted RBP15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 SLC25A40Q8TBP6 338 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 C1orf147Q96MC9 270 aaPredicted RBP15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 SLC6A7Q99884 636 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 MICU1Q9BPX6 476 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 DPCDQ9BVM2 203 aaPredicted RBP15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 OR2J1Q9GZK6 312 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 GPR160Q9UJ42 338 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 PQLC2LA1A4F0 135 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 MGMTP16455 207 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 HLA-GP17693 338 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 ZNF83P51522 516 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 PRSS12P56730 875 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 TAS2R31P59538 309 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 UBE2MP61081 183 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 RPS23P62266 143 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 NAAAQ02083 359 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 PDZK1IP1Q13113 114 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 FAM89BQ8N5H3 189 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 OR51T1Q8NGJ9 327 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 RAB3CQ96E17 227 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 ELMOD3Q96FG2 381 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 RTL8AQ9BWD3 113 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 SELENOIQ9C0D9 397 aa15.61■□□□□ 0.09
CCDC88C-203ENST00000389856 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 WIPF3A6NGB9 483 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 IQCF6A8MYZ5 107 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 M0R1B8 84 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 GOSR2O14653 212 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 IFNA6P05013 189 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 HIST1H1DP16402 221 aaKnown RBP15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 SERPINA2P20848 420 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 OR3A3P47888 321 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 GNG3P63215 75 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 SPATA46Q5T0L3 261 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 OR2T2Q6IF00 324 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 LIN54Q6MZP7 749 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 C11orf88Q6PI97 169 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 ZNF573Q86YE8 665 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 MKXQ8IYA7 352 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 OR13C8Q8NGS7 320 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 ANGPTL6Q8NI99 470 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 GAL3ST1Q99999 423 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 OCSTAMPQ9BR26 566 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 TM2D1Q9BX74 207 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 NGBQ9NPG2 151 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 COQ3Q9NZJ6 369 aa15.6■□□□□ 0.09
CCDC88C-203ENST00000389856 PRSS44E7EML9 344 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 MPC2O95563 127 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 H2BFSP57053 126 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 MZT1Q08AG7 82 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 FAM27E3Q08E93 113 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 EXOSC2Q13868 293 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 VAX1Q5SQQ9 334 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 OR8H3Q8N146 312 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 ARRDC1Q8N5I2 433 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 RELL2Q8NC24 303 aaPredicted RBP15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 BHLHE23Q8NDY6 225 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 KLF14Q8TD94 323 aaPredicted RBP15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 OR5P3Q8WZ94 311 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 MARS2Q96GW9 593 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 CCDC120Q96HB5 630 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 SCGB3A2Q96PL1 93 aa15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 RP1L1Q8IWN7 2480 aaPredicted RBP15.59■□□□□ 0.09
CCDC88C-203ENST00000389856 ZNF732B4DXR9 585 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 HTR3BO95264 441 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms