RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 KMT2EQ8IZD2 1858 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 F8VVB4 439 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 F8VWA3 439 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 CA11O75493 328 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 HOXB5P09067 269 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 PPIAP62937 165 aaKnown RBP11.56□□□□□ -0.56
CCDC3-202ENST00000378839 RAB32Q13637 225 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 OR1C1Q15619 314 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 FAM189A2Q15884 450 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 ATP1A1-AS1Q5TC04 95 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 PIGCQ92535 297 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 ZPBPQ9BS86 351 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 TTTY12Q9BZ98 90 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 ANXA10Q9UJ72 324 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 NOSIPQ9Y314 301 aaKnown RBP11.56□□□□□ -0.56
CCDC3-202ENST00000378839 IGKV3D-15A0A087WSY6 115 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 ZNF98A6NK75 572 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 F5H0A9 414 aaPredicted RBP11.56□□□□□ -0.56
CCDC3-202ENST00000378839 RRP8O43159 456 aaKnown RBP11.56□□□□□ -0.56
CCDC3-202ENST00000378839 HLA-HP01893 362 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 FCGR3AP08637 254 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 PDZK1IP1Q13113 114 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 EIF4E3Q8N5X7 224 aaKnown RBP11.56□□□□□ -0.56
CCDC3-202ENST00000378839 FNDC9Q8TBE3 224 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 TMEM45BQ96B21 275 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 BORCS8Q96FH0 119 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 FAM173AQ9BQD7 235 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 C1QTNF5Q9BXJ0 243 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 CALHM2Q9HA72 323 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 MLXQ9UH92 298 aa11.56□□□□□ -0.56
CCDC3-202ENST00000378839 ZNF407Q9C0G0 2248 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 A0A0B4J2A0 478 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 TEX13DA0A0J9YY54 714 aaPredicted RBP11.55□□□□□ -0.56
CCDC3-202ENST00000378839 LYL1P12980 280 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 DCAF10Q5QP82 559 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 COLCA1Q6ZS62 124 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 INO80EQ8NBZ0 244 aaPredicted RBP11.55□□□□□ -0.56
CCDC3-202ENST00000378839 DECR2Q9NUI1 292 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 SHPKQ9UHJ6 478 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 TRAV20A0A0B4J274 112 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 CSTBP04080 98 aaKnown RBP11.55□□□□□ -0.56
CCDC3-202ENST00000378839 ZNF708P17019 499 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 RBM39Q14498 530 aaKnown RBP11.55□□□□□ -0.56
CCDC3-202ENST00000378839 ZNF100Q8IYN0 542 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 TMEM251Q8N6I4 163 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 CCDC54Q8NEL0 328 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 SPSB4Q96A44 273 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 BOKQ9UMX3 212 aaPredicted RBP11.55□□□□□ -0.56
CCDC3-202ENST00000378839 ZNF850A8MQ14 1090 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 SNTB1Q13884 538 aaKnown RBP11.55□□□□□ -0.56
CCDC3-202ENST00000378839 CNN3Q15417 329 aaKnown RBP11.55□□□□□ -0.56
CCDC3-202ENST00000378839 PDSS1Q5T2R2 415 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 DHRS13Q6UX07 377 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 LHFPL2Q6ZUX7 228 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 TMEM17Q86X19 198 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 ZMAT5Q9UDW3 170 aaKnown RBP11.55□□□□□ -0.56
CCDC3-202ENST00000378839 HSF4Q9ULV5 492 aa11.55□□□□□ -0.56
CCDC3-202ENST00000378839 LAMA5O15230 3695 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 MRPL33O75394 65 aaKnown RBP11.54□□□□□ -0.56
CCDC3-202ENST00000378839 OR5H8P0DN80 308 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 IGFBP7Q16270 282 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 PLCXD3Q63HM9 321 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 NSUN5P2Q63ZY6 315 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 METTL8Q9H825 291 aaKnown RBP11.54□□□□□ -0.56
CCDC3-202ENST00000378839 ST3GAL6Q9Y274 331 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 LIPGQ9Y5X9 500 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 CCNOP22674 350 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 ITGA3P26006 1051 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 NOVA1P51513 510 aaKnown RBP11.54□□□□□ -0.56
CCDC3-202ENST00000378839 SP6Q3SY56 376 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 PAN3Q58A45 887 aaKnown RBP11.54□□□□□ -0.56
CCDC3-202ENST00000378839 OSR2Q8N2R0 312 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 OR1S2Q8NGQ3 325 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 CMSS1Q9BQ75 279 aaKnown RBP11.54□□□□□ -0.56
CCDC3-202ENST00000378839 GSKIPQ9P0R6 139 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 IL36RNQ9UBH0 155 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 R4GN57 208 aa11.54□□□□□ -0.56
CCDC3-202ENST00000378839 F12P00748 615 aaPredicted RBP11.53□□□□□ -0.56
CCDC3-202ENST00000378839 NGFP01138 241 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 ABHD17BQ5VST6 288 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 PRSS54Q6PEW0 395 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 DHRS11Q6UWP2 260 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 NUFIP2Q7Z417 695 aaKnown RBP11.53□□□□□ -0.56
CCDC3-202ENST00000378839 OR10Z1Q8NGY1 313 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 LRRC46Q96FV0 321 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 C2orf50Q96LR7 162 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 CRYM-AS1A6NIL9 109 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 GLI4P10075 376 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 SRSF3P84103 164 aaKnown RBP11.53□□□□□ -0.56
CCDC3-202ENST00000378839 ZNF169Q14929 603 aaPredicted RBP11.53□□□□□ -0.56
CCDC3-202ENST00000378839 PPA1Q15181 289 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 STOML3Q8TAV4 291 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 HPSE2Q8WWQ2 592 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 MRPL24Q96A35 216 aaKnown RBP11.53□□□□□ -0.56
CCDC3-202ENST00000378839 EDARQ9UNE0 448 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 LILRA1O75019 489 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 MT-CO3P00414 261 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 IFNA2P01563 188 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 FUT6P51993 359 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 PCBD1P61457 104 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms