RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ABCA7Q8IZY2 2146 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 CCDC187A0A096LP49 1063 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 TRBV23-1A0A0A0MS06 115 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 FAM230AA0A1W2PPH8 454 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 TLX3O43711 291 aaPredicted RBP14.27□□□□□ -0.13
SDC4-201ENST00000372733 PNLIPP16233 465 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 PMELP40967 661 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 GUCA1AP43080 201 aaPredicted RBP14.27□□□□□ -0.13
SDC4-201ENST00000372733 NOVA1P51513 510 aaKnown RBP14.27□□□□□ -0.13
SDC4-201ENST00000372733 ACER2Q5QJU3 275 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 FBXW12Q6X9E4 464 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 LURAP1LQ8IV03 231 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 ZNF565Q8N9K5 539 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 WDSUB1Q8N9V3 476 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 OR1J1Q8NGS3 322 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 NABP1Q96AH0 204 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 ZNF385AQ96PM9 386 aaKnown RBP14.27□□□□□ -0.13
SDC4-201ENST00000372733 SLC35B3Q9H1N7 401 aa14.27□□□□□ -0.13
SDC4-201ENST00000372733 ADAMTS20P59510 1910 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 NSG1A0A0A6YYJ2 146 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 H7C1Q1 480 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 SUCLG1P53597 346 aaKnown RBP14.26□□□□□ -0.13
SDC4-201ENST00000372733 RHEBQ15382 184 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 RSU1Q15404 277 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 NCMAPQ5T1S8 102 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 GALNT14Q96FL9 552 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 TCEAL7Q9BRU2 100 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 PLEK2Q9NYT0 353 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 PUS1Q9Y606 427 aaKnown RBP eCLIP14.26□□□□□ -0.13
SDC4-201ENST00000372733 CABIN1Q9Y6J0 2220 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 IGLV3-12A0A075B6K2 115 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 IGKV1-27A0A075B6S5 117 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 LMO1P25800 156 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 ITGA3P26006 1051 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 RPS23P62266 143 aaKnown RBP14.26□□□□□ -0.13
SDC4-201ENST00000372733 SLC22A25Q6T423 547 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 LIAT1Q6ZQX7 453 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 C18orf12Q96KH6 178 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 RARRES2Q99969 163 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 OR51M1Q9H341 326 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 LMAN1LQ9HAT1 526 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 SEMA5BQ9P283 1151 aa14.26□□□□□ -0.13
SDC4-201ENST00000372733 AP4M1O00189 453 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 OR5L2Q8NGL0 311 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 AKR7LQ8NHP1 331 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 EDARADDQ8WWZ3 215 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 RBM24Q9BX46 236 aaKnown RBP14.25□□□□□ -0.13
SDC4-201ENST00000372733 METTL9Q9H1A3 318 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 HDGFL3Q9Y3E1 203 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 STRAPQ9Y3F4 350 aaKnown RBP14.25□□□□□ -0.13
SDC4-201ENST00000372733 ASCC3Q8N3C0 2202 aaKnown RBP14.25□□□□□ -0.13
SDC4-201ENST00000372733 K7N7A8 449 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 GPR37O15354 613 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 DUSP1P28562 367 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 PIGYQ3MUY2 71 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 GPR157Q5UAW9 335 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 SGK3Q96BR1 496 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 MSI2Q96DH6 328 aaKnown RBP14.25□□□□□ -0.13
SDC4-201ENST00000372733 UCN2Q96RP3 112 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 PBDC1Q9BVG4 233 aa14.25□□□□□ -0.13
SDC4-201ENST00000372733 ST8SIA3O43173 380 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 ZFAND5O76080 213 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 CHATP28329 748 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 OTX1P32242 354 aaPredicted RBP14.24□□□□□ -0.13
SDC4-201ENST00000372733 EIF2S3P41091 472 aaKnown RBP14.24□□□□□ -0.13
SDC4-201ENST00000372733 CLINT1Q14677 625 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 MEX3BQ6ZN04 569 aaKnown RBP14.24□□□□□ -0.13
SDC4-201ENST00000372733 LINC00469Q8N7U9 141 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 TCTEX1D2Q8WW35 142 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 ZNF837Q96EG3 531 aaPredicted RBP14.24□□□□□ -0.13
SDC4-201ENST00000372733 SUCNR1Q9BXA5 334 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 PHF1O43189 567 aaPredicted RBP14.24□□□□□ -0.13
SDC4-201ENST00000372733 GLB1P16278 677 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 CPEB2Q7Z5Q1 589 aaKnown RBP14.24□□□□□ -0.13
SDC4-201ENST00000372733 SMRP1Q8NCR6 262 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 SPACA9Q96E40 222 aaPredicted RBP14.24□□□□□ -0.13
SDC4-201ENST00000372733 MALSU1Q96EH3 234 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 RASL10BQ96S79 203 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 ABHD14AQ9BUJ0 271 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 TINAGQ9UJW2 476 aa14.24□□□□□ -0.13
SDC4-201ENST00000372733 SHANK1Q9Y566 2161 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 CDRT15L2A8MXV6 281 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 GEMIN2O14893 280 aaKnown RBP14.23□□□□□ -0.13
SDC4-201ENST00000372733 PPIHO43447 177 aaKnown RBP14.23□□□□□ -0.13
SDC4-201ENST00000372733 OR2C1O95371 312 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 CD63P08962 238 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 DTYMKP23919 212 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 RAB5CP51148 216 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 CCL20P78556 96 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 EWSR1Q01844 656 aaKnown RBP eCLIP14.23□□□□□ -0.13
SDC4-201ENST00000372733 IL13RA2Q14627 380 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 PDCD1Q15116 288 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 C10orf128Q5T292 105 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 SLC25A45Q8N413 288 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 LRTM2Q8N967 370 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 SUMF2Q8NBJ7 301 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 SLAMF9Q96A28 289 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 CHRDQ9H2X0 955 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 MTCH2Q9Y6C9 303 aa14.23□□□□□ -0.13
SDC4-201ENST00000372733 CCDC85CA6NKD9 419 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms