RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 CRYGSP22914 178 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 VAMP1P23763 118 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 HRH1P35367 487 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 LUMP51884 338 aaPredicted RBP11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 PLP2Q04941 152 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 RBPJQ06330 500 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 ZNF273Q14593 569 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 ACTBL2Q562R1 376 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 PAN3Q58A45 887 aaKnown RBP11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 ZNF529Q6P280 563 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 ZNF101Q8IZC7 436 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 OR52H1Q8NGJ2 320 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 OR13C9Q8NGT0 318 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 SELENOIQ9C0D9 397 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 OR10A2Q9H208 303 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 PLSCR4Q9NRQ2 329 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 MYO7BQ6PIF6 2116 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 C5orf63A6NC05 138 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 WIPF3A6NGB9 483 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 TMEM14DPA8MWL7 114 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 CCSO14618 274 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 TNFSF13O75888 250 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 HLA-HP01893 362 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 APOC3P02656 99 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 DBHP09172 617 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 GSTP1P09211 210 aaKnown RBP11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 TIMP3P35625 211 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 ATP1B3P54709 279 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 RAB1AP62820 205 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 GFOD2Q3B7J2 385 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 OR52W1Q6IF63 320 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 NAA40Q86UY6 237 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 GVQW1Q8N7I0 195 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 OR4K15Q8NH41 348 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 KCNG3Q8TAE7 436 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 NUDCD2Q8WVJ2 157 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 CMBLQ96DG6 245 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 SCGB3A2Q96PL1 93 aa11.39□□□□□ -0.59
SQSTM1-201ENST00000360718 A0A0U1RQV5 110 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 F5H0A9 414 aaPredicted RBP11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 TEX46H3BTG2 121 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 TOR1AO14656 332 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 KALRNO60229 2985 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 GNB3P16520 340 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 AKR1C4P17516 323 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 SNTB1Q13884 538 aaKnown RBP11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 LY6DQ14210 128 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 PCSK4Q6UW60 755 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 UQCC3Q6UW78 93 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 KCTD9Q7L273 389 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 DOK3Q7L591 496 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 BCL2L2Q92843 193 aaPredicted RBP11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 PIGMQ9H3S5 423 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 GPR84Q9NQS5 396 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 ZNF319Q9P2F9 582 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 SHANK1Q9Y566 2161 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 RNF222A6NCQ9 220 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 C5orf51A6NDU8 294 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 OR2AT4A6NND4 320 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 E9PLN8 166 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 LCATP04180 440 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 COX5BP10606 129 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 IGHV1-2P23083 117 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 PSMB6P28072 239 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 UBE2NP61088 152 aaKnown RBP11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 PNLIPRP3Q17RR3 467 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 HIKESHIQ53FT3 197 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 CASTOR1Q8WTX7 329 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 MRPS28Q9Y2Q9 187 aaKnown RBP11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 KCNK7Q9Y2U2 307 aa11.38□□□□□ -0.59
SQSTM1-201ENST00000360718 PRR14LQ5THK1 2151 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 USP24Q9UPU5 2620 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 ATP6V1G2-DDX39BF2Z307 99 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 HOXC12P31275 282 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 CBX5P45973 191 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 ATXN7L3Q14CW9 347 aaPredicted RBP11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 GLIPR1L1Q6UWM5 242 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 BEND4Q6ZU67 534 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 HOGA1Q86XE5 327 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 DOLPP1Q86YN1 238 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 ARRDC1Q8N5I2 433 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 CCDC54Q8NEL0 328 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 TERB2Q8NHR7 220 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 FBXW5Q969U6 566 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 MRGPRFQ96AM1 343 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 RAB3CQ96E17 227 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 FAM71F1Q96KD3 344 aaPredicted RBP11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 MS4A7Q9GZW8 240 aaPredicted RBP11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 TINAGQ9UJW2 476 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 RELNP78509 3460 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 EEF1E1-BLOC1S5C9J1V9 151 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 MTRF1O75570 445 aaKnown RBP11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 RAD51DO75771 328 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 PMP2P02689 132 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 HGFACQ04756 655 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 KRTAP27-1Q3LI81 207 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 TMEM128Q5BJH2 165 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 BEX5Q5H9J7 111 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 FAM74A1Q5RGS3 127 aa11.37□□□□□ -0.59
SQSTM1-201ENST00000360718 VAX1Q5SQQ9 334 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms