RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 WFDC1Q9HC57 220 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 IGKV1-27A0A075B6S5 117 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 A0A0J9YW62 118 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 COLCA2A8K830 154 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 MSTNO14793 375 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 FCGR3AP08637 254 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 DVL1P1P54792 670 aaPredicted RBP10.57□□□□□ -0.72
CLIP3-201ENST00000360535 GUK1Q16774 197 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 BTNL8Q6UX41 500 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 SLC25A43Q8WUT9 341 aaPredicted RBP10.57□□□□□ -0.72
CLIP3-201ENST00000360535 C19orf25Q9UFG5 118 aaPredicted RBP10.57□□□□□ -0.72
CLIP3-201ENST00000360535 MUC3AQ02505 3323 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 CACNA1DQ01668 2161 aa10.57□□□□□ -0.72
CLIP3-201ENST00000360535 A0A1W2PPE3 182 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 C3orf80F5H4A9 247 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 TAAR5O14804 337 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 CCL1P22362 96 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 HGFACQ04756 655 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 FAM209BQ5JX69 171 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 KMT5CQ86Y97 462 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 PP6455Q8WZ26 134 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 FAM212BQ9NTI7 297 aaPredicted RBP10.56□□□□□ -0.72
CLIP3-201ENST00000360535 ANAPC10Q9UM13 185 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 ST3GAL6Q9Y274 331 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 CRYM-AS1A6NIL9 109 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 RD3LP0DJH9 198 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 EIF1P41567 113 aaKnown RBP10.56□□□□□ -0.72
CLIP3-201ENST00000360535 IL15RAQ13261 267 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 MAML2Q8IZL2 1156 aaPredicted RBP10.56□□□□□ -0.72
CLIP3-201ENST00000360535 TMEM217Q8N7C4 229 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 NEK7Q8TDX7 302 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 Q96M66 194 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 NECAP2Q9NVZ3 263 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 PARPBPQ9NWS1 579 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 CCDC187A0A096LP49 1063 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 A0A1W2PPE2 198 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 C7orf77A4D0Y5 90 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 CEACAM18A8MTB9 384 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 CTSDP07339 412 aaPredicted RBP10.56□□□□□ -0.72
CLIP3-201ENST00000360535 H2AFB1P0C5Y9 115 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 ZNF32P17041 273 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 DUSP1P28562 367 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 HABP2Q14520 560 aaPredicted RBP10.56□□□□□ -0.72
CLIP3-201ENST00000360535 C10orf91Q5T1B1 145 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 ZNF468Q5VIY5 522 aaPredicted RBP10.56□□□□□ -0.72
CLIP3-201ENST00000360535 TMEM268Q5VZI3 342 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 SRXN1Q9BYN0 137 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 ZNF700Q9H0M5 742 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 SLC2A9Q9NRM0 540 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 COA4Q9NYJ1 87 aa10.56□□□□□ -0.72
CLIP3-201ENST00000360535 COL5A1P20908 1838 aaPredicted RBP10.55□□□□□ -0.72
CLIP3-201ENST00000360535 IGLV3-12A0A075B6K2 115 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 BORCS7-ASMTA0A0B4J1R7 106 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 FAM24AA6NFZ4 105 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 NUDT19A8MXV4 375 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 CDRT15L2A8MXV6 281 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 UMAD1C9J7I0 102 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 JMJD7P0C870 316 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 CCL2P13500 99 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 PPP1CCP36873 323 aaKnown RBP10.55□□□□□ -0.72
CLIP3-201ENST00000360535 HERV-K104P61576 105 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 LSM6P62312 80 aaKnown RBP10.55□□□□□ -0.72
CLIP3-201ENST00000360535 PLCXD3Q63HM9 321 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 OPN5Q6U736 354 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 OR14L1PQ8NHC6 308 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 NABP1Q96AH0 204 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 NRASP01111 189 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 CFIP05156 583 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 LYL1P12980 280 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 RBP2P50120 134 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 PPA1Q15181 289 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 HIST3H3Q16695 136 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 EIF2S3LQ2VIR3 472 aaKnown RBP10.55□□□□□ -0.72
CLIP3-201ENST00000360535 SLC25A53Q5H9E4 307 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 ZFP62Q8NB50 900 aaPredicted RBP10.55□□□□□ -0.72
CLIP3-201ENST00000360535 OR10AD1Q8NGE0 317 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 SSC4DQ8WTU2 575 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 ABHD14AQ9BUJ0 271 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 NAA60Q9H7X0 242 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 GHRLQ9UBU3 117 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 CACFD1Q9UGQ2 172 aa10.55□□□□□ -0.72
CLIP3-201ENST00000360535 LINC00587B1AMM8 73 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 CD5P06127 495 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 S100A9P06702 114 aaKnown RBP10.54□□□□□ -0.72
CLIP3-201ENST00000360535 CCL4P13236 92 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 P4HA3Q7Z4N8 544 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 HIST1H2BAQ96A08 127 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 RARRES2Q99969 163 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 PHF7Q9BWX1 381 aaPredicted RBP10.54□□□□□ -0.72
CLIP3-201ENST00000360535 PARP11Q9NR21 331 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 V9GYS6 101 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 IGKV1-12A0A0C4DH73 117 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 E5RGE8 158 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 ATXN7O15265 892 aaPredicted RBP10.54□□□□□ -0.72
CLIP3-201ENST00000360535 IGKV1D-12P01611 117 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 ACAA1P09110 424 aaPredicted RBP10.54□□□□□ -0.72
CLIP3-201ENST00000360535 NQO2P16083 231 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 PTAFRP25105 342 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 NTF4P34130 210 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 FGFBP3Q8TAT2 258 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms