RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZNF660Q6AZW8 331 aaPredicted RBP17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 DEFB108BQ8NET1 73 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 SLC52A3Q9NQ40 469 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 KLRC4-KLRK1H3BQV0 150 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 SOCS1O15524 211 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 YIF1AO95070 293 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 FAM157BP0CG42 384 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 FAM3AP98173 230 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 PRDX4Q13162 271 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 OR1F12Q8NHA8 337 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 RPS4Y2Q8TD47 263 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 TAAR6Q96RI8 345 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 H3BQ15 152 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 GATCO43716 136 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 CT62P0C5K7 136 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 IL3RAP26951 378 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 CSN1S1P47710 185 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 TMEM240Q5SV17 173 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 BET1LQ9NYM9 111 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 GEMIN2O14893 280 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 BMP5P22003 454 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 PKIAP61925 76 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 ERHP84090 104 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 SURF2Q15527 256 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 OR11H4Q8NGC9 324 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 FBLIM1Q8WUP2 373 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 ZMIZ1Q9ULJ6 1067 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 MRPS2Q9Y399 296 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 RNASEKQ6P5S7 137 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 LINC00518Q8N0U6 118 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 NKX6-3A6NJ46 265 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 EFNB2P52799 333 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 NEIL1Q96FI4 390 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 NRTNQ99748 197 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 PARP11Q9NR21 331 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 TNFSF11O14788 317 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 PDCD6O75340 191 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 GYPAP02724 150 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 ACAA1P09110 424 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 ZGLP1P0C6A0 271 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 VSIG10L2P0DP72 767 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 C11orf42Q8N5U0 333 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 OR11G2Q8NGC1 345 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 DYRK2Q92630 601 aa17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 ALX4Q9H161 411 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-202ENST00000356786 CLEC3BP05452 202 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 HEXAP06865 529 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 Q6ZN92 141 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 ZNF764Q96H86 408 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 TRIB1Q96RU8 372 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 NAT8Q9UHE5 227 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 PRSS50Q9UI38 385 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 ADH4P08319 380 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 BPIFB3P59826 476 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 IL24Q13007 206 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 MPV17LQ2QL34 196 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 OR1N1Q8NGS0 311 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 ICE1Q9Y2F5 2266 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 SELEP16581 610 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 ZXDAP98168 799 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 FUT7Q11130 342 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 UBE2V2Q15819 145 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 ZNF141Q15928 474 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 TMEM196Q5HYL7 178 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 ZNF880Q6PDB4 577 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 TIPARPQ7Z3E1 657 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 MRPL24Q96A35 216 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 FOXB1Q99853 325 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 ANXA10Q9UJ72 324 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 OR5H15A6NDH6 313 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 OR5H1A6NKK0 313 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 CRISP2P16562 243 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 P2RY1P47900 373 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 PAX5Q02548 391 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 RABEPKQ7Z6M1 372 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 OR10G4Q8NGN3 311 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 OR10G9Q8NGN4 311 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 OR10G7Q8NGN6 311 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 WDR13Q9H1Z4 485 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 NEU3Q9UQ49 428 aa17.35■□□□□ 0.37
CCDC88B-202ENST00000356786 ARFGEF1Q9Y6D6 1849 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 TOX3O15405 576 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 CHRNB4P30926 498 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 ZFP36L2P47974 494 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 DYNLT3P51808 116 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 NSUN5P2Q63ZY6 315 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 LAIR2Q6ISS4 152 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 ADAD2Q8NCV1 583 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 FKBP11Q9NYL4 201 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 METTL12A8MUP2 240 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 ZNF154Q13106 437 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 RTL8BQ17RB0 113 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 ZNF107Q9UII5 783 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 MMP17Q9ULZ9 603 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 KCNAB3O43448 404 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 MUC1P15941 1255 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 ACSM6Q6P461 480 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 NUFIP2Q7Z417 695 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 PLPPR2Q96GM1 343 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms