RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 S100PP25815 95 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 ARR3P36575 388 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 AKR1D1P51857 326 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 HFEQ30201 348 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 ZNF260Q3ZCT1 412 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 C9orf135Q5VTT2 229 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 FBXW9Q5XUX1 488 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 RPUSD3Q6P087 351 aaKnown RBP11.13□□□□□ -0.63
CLK3-201ENST00000345005 DPPA2Q7Z7J5 298 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 LYPD6Q86Y78 171 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 LYZL4Q96KX0 146 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 TRIB1Q96RU8 372 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 SOX7Q9BT81 388 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 C12orf49Q9H741 205 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 CHMP1AQ9HD42 196 aaPredicted RBP11.13□□□□□ -0.63
CLK3-201ENST00000345005 POMT1Q9Y6A1 747 aa11.13□□□□□ -0.63
CLK3-201ENST00000345005 CELSR3Q9NYQ7 3312 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 PRRC2CQ9Y520 2896 aaKnown RBP11.12□□□□□ -0.63
CLK3-201ENST00000345005 DHRS7CA6NNS2 312 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 AHRRA9YTQ3 701 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 WRBO00258 174 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 LCATP04180 440 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 CRHP06850 196 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 COX5BP10606 129 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 ANOS1P23352 680 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 THBS4P35443 961 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 ATP1B3P54709 279 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 BLOC1S1P78537 153 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 GUCA2BQ16661 112 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 FAM209BQ5JX69 171 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 FAM74A1Q5RGS3 127 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 BIVMQ86UB2 503 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 SPACA3Q8IXA5 215 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 OR1S2Q8NGQ3 325 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 OR13C9Q8NGT0 318 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 WNT2BQ93097 391 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 SGK3Q96BR1 496 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 ZFP57Q9NU63 452 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 DNAJB11Q9UBS4 358 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 PRSS50Q9UI38 385 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 ZNF230Q9UIE0 474 aaPredicted RBP11.12□□□□□ -0.63
CLK3-201ENST00000345005 VSIG4Q9Y279 399 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 CHD8Q9HCK8 2581 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 CEP295Q9C0D2 2601 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 APC2O95996 2303 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 A0A096LPE4 126 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 A0A1W2PPZ6 126 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 C5orf63A6NC05 138 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 SSX5O60225 188 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 CRYABP02511 175 aaKnown RBP11.12□□□□□ -0.63
CLK3-201ENST00000345005 RPL35P42766 123 aaKnown RBP11.12□□□□□ -0.63
CLK3-201ENST00000345005 PPP1R1AQ13522 171 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 HMGN3Q15651 99 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 TRAPPC6BQ86SZ2 158 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 FJX1Q86VR8 437 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 ARRDC1Q8N5I2 433 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 RBMXL3Q8N7X1 1067 aaKnown RBP11.12□□□□□ -0.63
CLK3-201ENST00000345005 OR52N4Q8NGI2 321 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 PP6455Q8WZ26 134 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 ZNF75AQ96N20 296 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 RGCCQ9H4X1 137 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 RAB18Q9NP72 206 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 ASF1BQ9NVP2 202 aa11.12□□□□□ -0.63
CLK3-201ENST00000345005 SVILO95425 2214 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 C5orf51A6NDU8 294 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 DBX1A6NMT0 343 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 WISP2O76076 250 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 LYL1P12980 280 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 ZNF93P35789 620 aaPredicted RBP11.11□□□□□ -0.63
CLK3-201ENST00000345005 FOXG1P55316 489 aaPredicted RBP11.11□□□□□ -0.63
CLK3-201ENST00000345005 PJVKQ0ZLH3 352 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 SWI5Q1ZZU3 235 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 SNAI3Q3KNW1 292 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 TMEM128Q5BJH2 165 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 OR2A2Q6IF42 318 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 PUSL1Q8N0Z8 303 aaKnown RBP11.11□□□□□ -0.63
CLK3-201ENST00000345005 REEP6Q96HR9 211 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 WDR13Q9H1Z4 485 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 CNTD2Q9H8S5 307 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 TINAGQ9UJW2 476 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 ZFHX4Q86UP3 3567 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 CACNA1GO43497 2377 aa11.11□□□□□ -0.63
CLK3-201ENST00000345005 RRP8O43159 456 aaKnown RBP11.1□□□□□ -0.63
CLK3-201ENST00000345005 FABP1P07148 127 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 GSTP1P09211 210 aaKnown RBP11.1□□□□□ -0.63
CLK3-201ENST00000345005 FOLR2P14207 255 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 PAX6P26367 422 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 HGFACQ04756 655 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 PLP2Q04941 152 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 AVPI1Q5T686 147 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 NSUN5P2Q63ZY6 315 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 FAM214BQ7L5A3 538 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 LDLRAD3Q86YD5 345 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 OR5AS1Q8N127 324 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 CPEB3Q8NE35 698 aaKnown RBP11.1□□□□□ -0.63
CLK3-201ENST00000345005 SEMA6DQ8NFY4 1073 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 OR4D6Q8NGJ1 314 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 OR1K1Q8NGR3 316 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 SEC22AQ96IW7 307 aa11.1□□□□□ -0.63
CLK3-201ENST00000345005 CST11Q9H112 138 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms