RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 RAB39BQ96DA2 213 aa6.34□□□□□ -1.4
VCAN-202ENST00000342785 SAT2Q96F10 170 aaPredicted RBP6.34□□□□□ -1.4
VCAN-202ENST00000342785 SF3B5Q9BWJ5 86 aaKnown RBP6.34□□□□□ -1.4
VCAN-202ENST00000342785 SMOC1Q9H4F8 434 aa6.34□□□□□ -1.4
VCAN-202ENST00000342785 DYNLRB1Q9NP97 96 aa6.34□□□□□ -1.4
VCAN-202ENST00000342785 NPDC1Q9NQX5 325 aaPredicted RBP6.34□□□□□ -1.4
VCAN-202ENST00000342785 VSIG4Q9Y279 399 aa6.34□□□□□ -1.4
VCAN-202ENST00000342785 PLPPR5Q32ZL2 321 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 KCNIP4Q6PIL6 250 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 HIST2H3AQ71DI3 136 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 OR10P1Q8NGE3 313 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 LPAR5Q9H1C0 372 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 HIPK2Q9H2X6 1198 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 UQCC1Q9NVA1 299 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 MED9Q9NWA0 146 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 SCN4AP35499 1836 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 CYB5BO43169 146 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 TMEM65Q6PI78 240 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 DHRS13Q6UX07 377 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.33□□□□□ -1.4
VCAN-202ENST00000342785 ADAD2Q8NCV1 583 aaKnown RBP6.33□□□□□ -1.4
VCAN-202ENST00000342785 MRPL24Q96A35 216 aaKnown RBP6.33□□□□□ -1.4
VCAN-202ENST00000342785 CHST5Q9GZS9 411 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 PLXNA1Q9UIW2 1896 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 A0A0J9YW62 118 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 IGHV5-10-1A0A0J9YXX1 117 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 LMX1BO60663 402 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 PGA3P0DJD8 388 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 H2BFSP57053 126 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 FAM209AQ5JX71 171 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 ZNF660Q6AZW8 331 aaPredicted RBP6.33□□□□□ -1.4
VCAN-202ENST00000342785 SSX9Q7RTT3 188 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 ZNF561Q8N587 486 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 RAB33BQ9H082 229 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 LIN7CQ9NUP9 197 aaKnown RBP6.33□□□□□ -1.4
VCAN-202ENST00000342785 PSENENQ9NZ42 101 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 KRASP01116 189 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 CRYAAP02489 173 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 PTAFRP25105 342 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 DVL1P1P54792 670 aaPredicted RBP6.33□□□□□ -1.4
VCAN-202ENST00000342785 ZNF260Q3ZCT1 412 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 ZNF787Q6DD87 383 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 RPUSD4Q96CM3 377 aaKnown RBP6.33□□□□□ -1.4
VCAN-202ENST00000342785 UHRF2Q96PU4 802 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 C19orf12Q9NSK7 152 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 CCDC187A0A096LP49 1063 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 GEMIN2O14893 280 aaKnown RBP6.33□□□□□ -1.4
VCAN-202ENST00000342785 HOXA1P49639 335 aaPredicted RBP6.33□□□□□ -1.4
VCAN-202ENST00000342785 FAM58AQ8N1B3 248 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 OR5C1Q8NGR4 320 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 MMP24Q9Y5R2 645 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 WSB1Q9Y6I7 421 aa6.33□□□□□ -1.4
VCAN-202ENST00000342785 TSTD3H0UI37 97 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 MPPED1O15442 326 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 SPINK2P20155 84 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 CA6P23280 308 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 RPS11P62280 158 aaKnown RBP eCLIP6.32□□□□□ -1.4
VCAN-202ENST00000342785 POLR2GP62487 172 aaKnown RBP eCLIP6.32□□□□□ -1.4
VCAN-202ENST00000342785 PMP22Q01453 160 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 GCNT2Q8N0V5 402 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 NTNG2Q96CW9 530 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 MSI2Q96DH6 328 aaKnown RBP6.32□□□□□ -1.4
VCAN-202ENST00000342785 C12orf57Q99622 126 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 CLEC18AA5D8T8 446 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 BTBD17A6NE02 478 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 PPP5D1E7EU14 171 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 MS4A18H0YCH9 400 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 MPLP40238 635 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 GAS1P54826 345 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 EFNB1P98172 346 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 MS4A18Q3C1V0 323 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 FDX2Q6P4F2 183 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 HOGA1Q86XE5 327 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 C1orf87Q8N0U7 546 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 CLEC18CQ8NCF0 446 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 SMIM7Q9BQ49 75 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 DUSP15Q9H1R2 295 aaPredicted RBP6.32□□□□□ -1.4
VCAN-202ENST00000342785 TCFL5Q9UL49 500 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 ZNF638Q14966 1978 aaKnown RBP6.32□□□□□ -1.4
VCAN-202ENST00000342785 MYO16Q9Y6X6 1858 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 A0A1W2PR77 199 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 PATE3B3GLJ2 98 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 SELEP16581 610 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 DEFA6Q01524 100 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 ZNF718Q3SXZ3 478 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 LAMTOR1Q6IAA8 161 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 MRPL41Q8IXM3 137 aaKnown RBP6.32□□□□□ -1.4
VCAN-202ENST00000342785 STPG2Q8N412 459 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 RFESDQ8TAC1 157 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 NMES1Q9C002 83 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 OPA3Q9H6K4 179 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 C3orf85A0A1B0GTC6 90 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 SHOXO15266 292 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 ADAM20O43506 726 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 TMEM41BQ5BJD5 291 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 CBLN2Q8IUK8 224 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 TRIB1Q96RU8 372 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 SAMD10Q9BYL1 202 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 LOC285556D6RIA3 1793 aa6.32□□□□□ -1.4
VCAN-202ENST00000342785 MEX3AA1L020 520 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms