RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 H3BUX3 64 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 RPL34P49207 117 aaKnown RBP7.3□□□□□ -1.24
HMGB1-203ENST00000341423 LCN12Q6JVE5 192 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 LCNL1Q6ZST4 164 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 CALHM1Q8IU99 346 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF511Q8NB15 262 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 RNF141Q8WVD5 230 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 CNRIP1Q96F85 164 aaPredicted RBP7.3□□□□□ -1.24
HMGB1-203ENST00000341423 IMMP1LQ96LU5 166 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 IGSF5Q9NSI5 407 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 ARMC1Q9NVT9 282 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 MCM3APO60318 1980 aa7.3□□□□□ -1.24
HMGB1-203ENST00000341423 PRDX2P32119 198 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 TSPAN31Q12999 210 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 SELPLGQ14242 412 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 TOMM34Q15785 309 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-203ENST00000341423 RNF144BQ7Z419 303 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 ABHD12Q8N2K0 398 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 OR6M1Q8NGM8 313 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 OR51H1Q8NH63 302 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 MUL1Q969V5 352 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 ACY3Q96HD9 319 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 CCDC32Q9BV29 185 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 OR2H1Q9GZK4 316 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 EXOSC3Q9NQT5 275 aaKnown RBP7.29□□□□□ -1.24
HMGB1-203ENST00000341423 LIN7CQ9NUP9 197 aaKnown RBP7.29□□□□□ -1.24
HMGB1-203ENST00000341423 AP5S1Q9NUS5 200 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 NAGKQ9UJ70 344 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 HELTA6NFD8 242 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 PITX3O75364 302 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 NDUFB8O95169 186 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 MEOX2P50222 304 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 PRICKLE4Q2TBC4 344 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 ARHGEF39Q8N4T4 335 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 SIGLECL1Q8N7X8 197 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 NHLRC2Q8NBF2 726 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 OR8G5Q8NG78 346 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 CHST6Q9GZX3 395 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 C12orf10Q9HB07 376 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 INPP5EQ9NRR6 644 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF222Q9UK12 451 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 ST3GAL6Q9Y274 331 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 VSIG4Q9Y279 399 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 TET1Q8NFU7 2136 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 A0A0A6YYD5 115 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 KRASP01116 189 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 WT1P19544 449 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-203ENST00000341423 RELQ04864 619 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-203ENST00000341423 RTN4RL2Q86UN3 420 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 BTF3L4Q96K17 158 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 FKBP14Q9NWM8 211 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF107Q9UII5 783 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-203ENST00000341423 LIPT2A6NK58 231 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 DEFB108AA8MXU0 73 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 ZNHIT1O43257 154 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 LHBP01229 141 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 PRSS3P35030 304 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF121P58317 390 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-203ENST00000341423 PNLIPRP3Q17RR3 467 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 LURAP1LQ8IV03 231 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 NMNAT1Q9HAN9 279 aaPredicted RBP7.29□□□□□ -1.24
HMGB1-203ENST00000341423 SERTAD4Q9NUC0 356 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 ALG5Q9Y673 324 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 IGF2RP11717 2491 aa7.29□□□□□ -1.24
HMGB1-203ENST00000341423 XRCC3O43542 346 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 HAND1O96004 215 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 TAS2R30P59541 319 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 HIST2H2BCQ6DN03 193 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ZBTB46Q86UZ6 589 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF721Q8TF20 911 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 DOCK8Q8NF50 2099 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 DCTN6O00399 190 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ST8SIA3O43173 380 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 GPRIN2O60269 458 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 UMODP07911 640 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 HLA-GP17693 338 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ACKR3P25106 362 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 TAS2R20P59543 309 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 ACVR1Q04771 509 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 WDR88Q6ZMY6 472 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 OSR2Q8N2R0 312 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 COMMD1Q8N668 190 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 PLPP7Q8NBV4 271 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 SLC38A9Q8NBW4 561 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 OR56B4Q8NH76 319 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 HARBI1Q96MB7 349 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 TAS2R8Q9NYW2 309 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 MDC1Q14676 2089 aaKnown RBP7.28□□□□□ -1.24
HMGB1-203ENST00000341423 A0A0A6YYH2 397 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 CCDC182A6NF36 153 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 A6NJ64 397 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 OR2T7P0C7T2 308 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 MST1P26927 711 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 CEACAM8P31997 349 aaPredicted RBP7.28□□□□□ -1.24
HMGB1-203ENST00000341423 DGCR2P98153 550 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 C9orf66Q5T8R8 295 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 THNSL2Q86YJ6 484 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 TOMM5Q8N4H5 51 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 TMEM174Q8WUU8 243 aa7.28□□□□□ -1.24
HMGB1-203ENST00000341423 C1QTNF4Q9BXJ3 329 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms