RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 NUP50Q9UKX7 468 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 SESN1Q9Y6P5 492 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 TRBV6-7A0A0A0MS04 114 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 A8MXK9 166 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 ZP3P21754 424 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 PPIAP62937 165 aaKnown RBP12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 NUFIP2Q7Z417 695 aaKnown RBP12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 TOMM40LQ969M1 308 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 APH1AQ96BI3 265 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 BCO1Q9HAY6 547 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 TMEM9BQ9NQ34 198 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 GSKIPQ9P0R6 139 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 EDARQ9UNE0 448 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 MSGN1A6NI15 193 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 RPL36A-HNRNPH2H7BZ11 118 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 NME2P1O60361 137 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 IFNA2P01563 188 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 FGF2P09038 288 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 NME2P22392 152 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 NUP62P37198 522 aaPredicted RBP12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 TGIF1Q15583 401 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 TUSC1Q2TAM9 212 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 MDS2Q8NDY4 140 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 BVESQ8NE79 360 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 IL36GQ9NZH8 169 aa12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 ZNF629Q9UEG4 869 aaPredicted RBP12.83□□□□□ -0.36
CLCNKA-201ENST00000331433 DTYMKP23919 212 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 RAB32Q13637 225 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 DAZAP2Q15038 168 aaPredicted RBP12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 NSUN5P2Q63ZY6 315 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 DHRS9Q9BPW9 319 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 REPIN1Q9BWE0 567 aaKnown RBP12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 ZFHX4Q86UP3 3567 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 TEX13DA0A0J9YY54 714 aaPredicted RBP12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 OR7C1O76099 320 aaPredicted RBP12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 NGFP01138 241 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 RBMXP38159 391 aaKnown RBP12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 RBM11P57052 281 aaKnown RBP12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 SNTB1Q13884 538 aaKnown RBP12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 ELP2Q6IA86 826 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 SLC22A25Q6T423 547 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 Q6ZPA2 131 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 POC1AQ8NBT0 407 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 PIK3IP1Q96FE7 263 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 FER1L6-AS2Q96M78 137 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 FGF23Q9GZV9 251 aaPredicted RBP12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 DEFB127Q9H1M4 99 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 C12orf49Q9H741 205 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 NECAP2Q9NVZ3 263 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 ATPIF1Q9UII2 106 aa12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 KLF13Q9Y2Y9 288 aaPredicted RBP12.82□□□□□ -0.36
CLCNKA-201ENST00000331433 ARGFXA6NJG6 315 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 ZNF724A8MTY0 619 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 PDCD6O75340 191 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 CTSDP07339 412 aaPredicted RBP12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 ZNF806P0C7X5 589 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 FXYD4P59646 89 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 S100A10P60903 97 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 RAB1AP62820 205 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 HSD17B13Q7Z5P4 300 aaPredicted RBP12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 FOXRED2Q8IWF2 684 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 GALNT11Q8NCW6 608 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 MRPS24Q96EL2 167 aaKnown RBP12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 C2orf50Q96LR7 162 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 BARX1Q9HBU1 254 aaPredicted RBP12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 CFAP47Q6ZTR5 3102 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 ARHGAP21Q5T5U3 1957 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 KLRC4-KLRK1H3BQV0 150 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 SPINK2P20155 84 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 GPM6AP51674 278 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 PRDX4Q13162 271 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 RBM39Q14498 530 aaKnown RBP12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 PAN3Q58A45 887 aaKnown RBP12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 PRSS54Q6PEW0 395 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 SGPP2Q8IWX5 399 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 MCEMP1Q8IX19 187 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 PHYHIPLQ96FC7 376 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 TECTBQ96PL2 329 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 DECR2Q9NUI1 292 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 PRSS50Q9UI38 385 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 STARD10Q9Y365 291 aa12.81□□□□□ -0.36
CLCNKA-201ENST00000331433 CRYM-AS1A6NIL9 109 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 ECI1P42126 302 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 PIGPP57054 158 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 SPEM2Q0P670 501 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 MALLQ13021 153 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 SLC10A1Q14973 349 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 RNFT1Q5M7Z0 435 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 MRPL21Q7Z2W9 205 aaKnown RBP12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 STPG2Q8N412 459 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 HPSE2Q8WWQ2 592 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 SLAMF9Q96A28 289 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 IP6K3Q96PC2 410 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 HS3ST6Q96QI5 342 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 ZNF442Q9H7R0 627 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 C1orf123Q9NWV4 160 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 SPENQ96T58 3664 aaKnown RBP12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 PQLC2LA1A4F0 135 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 F8VVB4 439 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms