RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 MIXL1Q9H2W2 232 aa12.96□□□□□ -0.34
PDLIM5-202ENST00000318007 CXorf56Q9H5V9 222 aa12.96□□□□□ -0.34
PDLIM5-202ENST00000318007 TMEM106BQ9NUM4 274 aa12.96□□□□□ -0.34
PDLIM5-202ENST00000318007 RHBDL2Q9NX52 303 aa12.96□□□□□ -0.34
PDLIM5-202ENST00000318007 ABRACLQ9P1F3 81 aa12.96□□□□□ -0.34
PDLIM5-202ENST00000318007 SPATA2Q9UM82 520 aa12.96□□□□□ -0.34
PDLIM5-202ENST00000318007 ISPDA4D126 451 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 H7C417 338 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 CLPXO76031 633 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 PTHLHP12272 177 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 GATA4P43694 442 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 QRFPP83859 136 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 NKAPLQ5M9Q1 402 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 MZT2AQ6P582 158 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 CMTM4Q8IZR5 234 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 FAM58AQ8N1B3 248 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 PXT1Q8NFP0 134 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 OR11L1Q8NGX0 322 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 GCDHQ92947 438 aaPredicted RBP12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 NRIP2Q9BQI9 281 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 RNF7Q9UBF6 113 aa12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 MRPS7Q9Y2R9 242 aaKnown RBP12.95□□□□□ -0.34
PDLIM5-202ENST00000318007 A0A0A6YYD4 124 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 TMEM14DPA8MWL7 114 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 OR7C1O76099 320 aaPredicted RBP12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 IGHV4-39P01824 125 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 CD37P11049 281 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 POC1AQ8NBT0 407 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 KCNG3Q8TAE7 436 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 LRRC30A6NM36 301 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 OVOL3O00110 214 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 S100A5P33763 92 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 ART1P52961 327 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 ATP5J2P56134 94 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 IKZF1Q13422 519 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 RNASE12Q5GAN4 147 aaKnown RBP12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 UBE2NLQ5JXB2 153 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 ZSCAN4Q8NAM6 433 aaPredicted RBP12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 KCTD12Q96CX2 325 aaKnown RBP12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 DIRAS2Q96HU8 199 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 LPAR5Q9H1C0 372 aa12.94□□□□□ -0.34
PDLIM5-202ENST00000318007 ARID1AO14497 2285 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 A0A1B0GW55 424 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 MEX3AA1L020 520 aaKnown RBP12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 RFPL4AA6NLU0 287 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 SRRM5B3KS81 715 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 RFPL4AL1F8VTS6 287 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 SIRPB1O00241 398 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 LDLRAD4O15165 306 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 SOCS1O15524 211 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 GYPAP02724 150 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 FCER2P06734 321 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 DUX4L2P0CJ85 424 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 DUX4L3P0CJ86 424 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 DUX4L4P0CJ87 422 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 DUX4L5P0CJ88 424 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 DUX4L6P0CJ89 424 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 DUX4L7P0CJ90 424 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 ZNF44P15621 663 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 GABRA2P47869 451 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 ATAD3CQ5T2N8 411 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 DUX4L9Q6RFH8 374 aaPredicted RBP12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 ACP7Q6ZNF0 438 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 BPIFB2Q8N4F0 458 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 CHST4Q8NCG5 386 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 ACOT12Q8WYK0 555 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 DYRK2Q92630 601 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 NXF2Q9GZY0 626 aaKnown RBP12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 MMP27Q9H306 513 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 HMG20AQ9NP66 347 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 EXTL2Q9UBQ6 330 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 DUX4Q9UBX2 424 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 METRNQ9UJH8 293 aa12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 ELF5Q9UKW6 265 aaPredicted RBP12.93□□□□□ -0.34
PDLIM5-202ENST00000318007 TMEM178BH3BS89 294 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 PPIHO43447 177 aaKnown RBP12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 ZNF780AO75290 641 aaPredicted RBP12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 UBBP0CG47 229 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 CDK2P24941 298 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 CFPP27918 469 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 TNFSF8P32971 234 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 RBM11P57052 281 aaKnown RBP12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 FGF12P61328 243 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 ERVK11-1P61568 191 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 RPS27AP62979 156 aaKnown RBP12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 CNIH2Q6PI25 160 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 FAM90A1Q86YD7 464 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 OR4M1Q8NGD0 313 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 PHF21AQ96BD5 680 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 CHST6Q9GZX3 395 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 NAV2Q8IVL1 2488 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 F12P00748 615 aaPredicted RBP12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 SELLP14151 372 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 PITPNBP48739 271 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 EFNA4P52798 201 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 ASCL4Q6XD76 172 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 C6orf201Q7Z4U5 140 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 SAXO1Q8IYX7 474 aa12.92□□□□□ -0.34
PDLIM5-202ENST00000318007 NEU4Q8WWR8 484 aaPredicted RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms