RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SOSTQ9BQB4 213 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 NPFFR1Q9GZQ6 430 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ITSN1Q15811 1721 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 TINCRA0A1B0GVN0 87 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 LRP3O75074 770 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 FOXH1O75593 365 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 TBX6O95947 436 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 IRF1P10914 325 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 LAMP1P11279 417 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 OR1E2P47887 323 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 FAM3BP58499 235 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 MBLAC2Q68D91 279 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 GALNT16Q8N428 558 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 NUDT8Q8WV74 236 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 RTN4IP1Q8WWV3 396 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SPRY2O43597 315 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 RENP00797 406 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 RPL7P18124 248 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 UBE2NLQ5JXB2 153 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 TMBIM1Q969X1 311 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ANGPTL4Q9BY76 406 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 EXOSC3Q9NQT5 275 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 FTSJ1Q9UET6 329 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 CYSLTR1Q9Y271 337 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 POLDIP2Q9Y2S7 368 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SPCS1Q9Y6A9 102 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 DVL1O14640 695 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 NEURL1O76050 574 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 MDKP21741 143 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CD300EQ496F6 205 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 RHBDF2Q6PJF5 856 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 KCNRGQ8N5I3 272 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 GPR26Q8NDV2 337 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR11H4Q8NGC9 324 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SCGB1C1Q8TD33 95 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM121BQ9BXQ6 578 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SLC25A39Q9BZJ4 359 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 NUDT4Q9NZJ9 180 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ERG28Q9UKR5 140 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SF3B6Q9Y3B4 125 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TECTAO75443 2155 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 LMX1BO60663 402 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 GABARAPL2P60520 117 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 PLPP4Q5VZY2 271 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 PLAG1Q6DJT9 500 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CYB5RLQ6IPT4 315 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 MEPCEQ7L2J0 689 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ADGRE4PQ86SQ3 457 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 KLHDC8AQ8IYD2 350 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR8B12Q8NGG6 310 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR4D11Q8NGI4 311 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 LGALS14Q8TCE9 139 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 BANF2Q9H503 90 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SIGLEC8Q9NYZ4 499 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ARHGAP35Q9NRY4 1499 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SHC1P29353 583 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 MEF2BQ02080 365 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 LTBQ06643 244 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ELAVL3Q14576 367 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ZCCHC23Q6ZST2 131 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF550Q7Z398 422 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM219Q86XT9 240 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF675Q8TD23 568 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ABHD5Q8WTS1 349 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 C18orf15Q96N68 181 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 WFDC1Q9HC57 220 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 RTEL1-TNFRSF6BF6WH68 1400 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 FAM240AA0A1B0GVK7 77 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 HIST1H1EP10412 219 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 IGFBP2P18065 325 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 RPL21P46778 160 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 LGALS7P47929 136 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 LRRC10Q5BKY1 277 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 MORN1Q5T089 497 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR4A5Q8NH83 315 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF300Q96RE9 604 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 MBOAT4Q96T53 435 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 MRPL45Q9BRJ2 306 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM126AQ9H061 195 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 PPDPFQ9H3Y8 114 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR5AC2Q9NZP5 309 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SIRT4Q9Y6E7 314 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 G3V4G9 280 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 NDUFB10O96000 172 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 GABRB3P28472 473 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SELENOPP49908 381 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 EXOSC7Q15024 291 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF683Q8IZ20 524 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR1S2Q8NGQ3 325 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 NIPSNAP3BQ9BS92 247 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SYNPO2LQ9H987 977 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CHD8Q9HCK8 2581 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 H0Y8X5 98 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 IL2RAP01589 272 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SBK3P0C264 359 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 GFRA1P56159 465 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ZXDAP98168 799 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ZXDBP98169 803 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 HOXC5Q00444 222 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms