RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 LOC105371242A0A075B767 164 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 IGKV1-9A0A0C4DH69 117 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 TRBV5-5A0A0J9YX44 114 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 AKR7A2O43488 359 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 GPX5O75715 221 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 KNG1P01042 644 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 FSHBP01225 129 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 GYPAP02724 150 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 CRHBPP24387 322 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 BMXP51813 675 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 BPIFB3P59826 476 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 IRF3Q14653 427 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 FAHD2BQ6P2I3 314 aaPredicted RBP15.19■□□□□ 0.02
CLN3-259ENST00000637551 FIP1L1Q6UN15 594 aaKnown RBP15.19■□□□□ 0.02
CLN3-259ENST00000637551 LYPD2Q6UXB3 125 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 PRSS48Q7RTY5 328 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 CALHM1Q8IU99 346 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 ZNF561Q8N587 486 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 BOLLQ8N9W6 283 aaKnown RBP15.19■□□□□ 0.02
CLN3-259ENST00000637551 OR10AC1Q8NH08 325 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 C8orf46Q8TAG6 207 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 NANPQ8TBE9 248 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 FAHD2AQ96GK7 314 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 PGLYRP3Q96LB9 341 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 CEP19Q96LK0 163 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 C7orf69Q9H7B7 122 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 ISYNA1Q9NPH2 558 aa15.19■□□□□ 0.02
CLN3-259ENST00000637551 A0A0A6YYJ9 748 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 RNF212BA8MTL3 300 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 TRAPPC2LH3BP13 241 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 DENRO43583 198 aaKnown RBP15.18■□□□□ 0.02
CLN3-259ENST00000637551 NDUFB3O43676 98 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 ALDOBP05062 364 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 OCM2P0CE71 109 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 OCMP0CE72 109 aaPredicted RBP15.18■□□□□ 0.02
CLN3-259ENST00000637551 ADRA2CP18825 462 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 FSTP19883 344 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 RAB3AP20336 220 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 MAPK3P27361 379 aaPredicted RBP15.18■□□□□ 0.02
CLN3-259ENST00000637551 GTF2A1P52655 376 aaPredicted RBP15.18■□□□□ 0.02
CLN3-259ENST00000637551 MTCP1P56278 107 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 Q499Y3 187 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 XAF1Q6GPH4 301 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 PHC2Q8IXK0 858 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 MS4A15Q8N5U1 240 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 GATAD2BQ8WXI9 593 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 RGP1Q92546 391 aaPredicted RBP15.18■□□□□ 0.02
CLN3-259ENST00000637551 GHSRQ92847 366 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 TMEM106AQ96A25 262 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 YTHDF1Q9BYJ9 559 aaKnown RBP15.18■□□□□ 0.02
CLN3-259ENST00000637551 FAM234AQ9H0X4 552 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 WDR13Q9H1Z4 485 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 AUP1Q9Y679 476 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 SVEP1Q4LDE5 3571 aa15.18■□□□□ 0.02
CLN3-259ENST00000637551 IGKV1-27A0A075B6S5 117 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 TRBV23-1A0A0A0MS06 115 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 FAM230AA0A1W2PPH8 454 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 A6NIN4 97 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 DVL1O14640 695 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 PHF1O43189 567 aaPredicted RBP15.17■□□□□ 0.02
CLN3-259ENST00000637551 RGS10O43665 173 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 SYNGR1O43759 233 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 NXPH2O95156 264 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 LALBAP00709 142 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 PSG2P11465 335 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 SRP14P37108 136 aaKnown RBP15.17■□□□□ 0.02
CLN3-259ENST00000637551 GABARAPL2P60520 117 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 HNRNPA0Q13151 305 aaKnown RBP15.17■□□□□ 0.02
CLN3-259ENST00000637551 SPHARQ15513 63 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 SPIN3Q5JUX0 258 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 CDH26Q8IXH8 852 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 KIR3DL3Q8N743 410 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 UPRTQ96BW1 309 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 NUDT16L1Q9BRJ7 211 aaKnown RBP15.17■□□□□ 0.02
CLN3-259ENST00000637551 CKLFQ9UBR5 152 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 OPN4Q9UHM6 478 aa15.17■□□□□ 0.02
CLN3-259ENST00000637551 LSM2Q9Y333 95 aaKnown RBP15.17■□□□□ 0.02
CLN3-259ENST00000637551 CUBNO60494 3623 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 IGKV1D-17A0A075B6S4 117 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 MAGEB3O15480 346 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 PPP3R1P63098 170 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 PDZK1IP1Q13113 114 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 C1orf122Q6ZSJ8 110 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 LY6G5BQ8NDX9 201 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 C19orf18Q8NEA5 215 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 PXT1Q8NFP0 134 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 OR13C9Q8NGT0 318 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 TRMT10AQ8TBZ6 339 aaKnown RBP15.16■□□□□ 0.02
CLN3-259ENST00000637551 TBC1D15Q8TC07 691 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 GAFA1Q96PS6 74 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 SMURF1Q9HCE7 757 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 TMEM138Q9NPI0 162 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 MMP26Q9NRE1 261 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 RPUSD1Q9UJJ7 312 aaKnown RBP15.16■□□□□ 0.02
CLN3-259ENST00000637551 KPTNQ9Y664 436 aa15.16■□□□□ 0.02
CLN3-259ENST00000637551 IGHV3OR15-7A0A075B7D8 119 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 PTGES3LE9PB15 166 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 RRP9O43818 475 aaKnown RBP15.15■□□□□ 0.02
CLN3-259ENST00000637551 AMY2BP19961 511 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 PSMA1P25786 263 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms